Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytochrome P450 6a8.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g62 g62.t1 TTS g62.t1 443653 443653
chr_3 g62 g62.t1 isoform g62.t1 443735 445599
chr_3 g62 g62.t1 exon g62.t1.exon1 443735 443925
chr_3 g62 g62.t1 cds g62.t1.CDS1 443735 443925
chr_3 g62 g62.t1 exon g62.t1.exon2 443982 444209
chr_3 g62 g62.t1 cds g62.t1.CDS2 443982 444209
chr_3 g62 g62.t1 exon g62.t1.exon3 444269 444440
chr_3 g62 g62.t1 cds g62.t1.CDS3 444269 444440
chr_3 g62 g62.t1 exon g62.t1.exon4 444495 445048
chr_3 g62 g62.t1 cds g62.t1.CDS4 444495 445048
chr_3 g62 g62.t1 exon g62.t1.exon5 445233 445599
chr_3 g62 g62.t1 cds g62.t1.CDS5 445233 445599
chr_3 g62 g62.t1 TSS g62.t1 445628 445628

Sequences

>g62.t1 Gene=g62 Length=1512
ATGTCTTTCATAGTTTCGCTACTTTTTATCGGTGCTTTAATATTAGGCTTTTACTATTTA
CGCCGTCAAATGAATTATTGGAAAAATCGTGGTGTGCCTTCAATTAAGCCTTCGTATATT
TTTGGCAATCTTGATGGTGTTGGAGAAAAAATACATTTTACAATAAATTTACAAAATATC
TACGAGACTTTCAAGGACAATTACAAATTTTGTGGAATTTATGCGCTACAAAGTCCACGA
TTAATGCTGATTGATTTGGAACTGATAAAAAATATTCTTATCAAAGATTTTCATTATTTT
ACTGATAGAGGTGTTTATGTAAACGAAGAAGATGATCCATTGAGTGCTCATTTATTTGCA
ATCGAAGGTGAAAAATGGAAAAGTCTTCGTCATAAATTAAGTGCAACATTCACTGGCAAT
AAAATGAGATTGATGTGCCCAATAATTGAAGAGTACTCAAAAGATTTAATCAATTTGATT
GACTCATTTGCATCATCTAATAATGAAATTGATATAAAGAACATTTGTACTCGTTTCACA
GCAGATGTTATTGGGTCATGTGGTTTTGGGATCTCATGTAATGCAATGCGTGAAGAGAAT
ACAGAAATGATGCAAATGGGAAAATTTTTTGATCTAACTAATAAACGTACTCGTGCAAAC
TTTTTCTTTGTCAATATTTTTCCTAAACTTGCAAAACGTTTACGTATGAAAGTCACACCA
CAATTTATAAGCAATTTTTTCATACCTATGATTCAACAAACGTACGAATATCGCATTAAA
AATGATGACAATCGTAATGACTTCCTTTCGCTTTTAATACAAATTAAAAAATATGGAAAA
CTCAAGGATGAAGAAATGGAAAATGTTGGCACAATGACTTTCAATGAGCTTATAGCACAA
AGTTTTATCTTCTTCATTGCCGGCTTTGAAACAAGCAGCACAACGATGACAATGGCACTT
TATGAATTAGCTTATCGCCATGACATTCAAGAAAAGCTGCGAAATGAAATTGAGGAAATA
ACACGTCAATATGACGGGAAAATTTCTTATGAAGCTATAAATAATATGCCGTATTTAGAT
CAAGTTGTAAATGAAACTCTTCGTCTTTATTCACCAATTGGTCAACTATTTAGAATTGCA
ATAAAAGACTATAAAGTGCCAGACTCAAATTTAATAATTGAAAAAGGAACTTCAATTTTT
ATTCCTGTTCATGCAATTCACCATGATTGTCGTTATTTTTATGACCCTGAAAATTTCATT
CCTGAAAGATTTGAGCAAGAGAAAATGAAAAAATTGCCTCAATTATGTTTTCTACCTTTT
GGTGCTGGTAATCGTAATTGTATTGGAATGAGATTCGGATTAATGCAGACAAAAGTTGGA
ATCGCTTCAATATTTAAAAACTTTAAATTATCTCATCACAAATTAACGAGATATCCATTA
GTACTTGATCCTAAAAGTGCCGTTGTAAATTCACTTAAACCTATTTTAATTGAAGCTGAA
AGGATATTTTGA

>g62.t1 Gene=g62 Length=503
MSFIVSLLFIGALILGFYYLRRQMNYWKNRGVPSIKPSYIFGNLDGVGEKIHFTINLQNI
YETFKDNYKFCGIYALQSPRLMLIDLELIKNILIKDFHYFTDRGVYVNEEDDPLSAHLFA
IEGEKWKSLRHKLSATFTGNKMRLMCPIIEEYSKDLINLIDSFASSNNEIDIKNICTRFT
ADVIGSCGFGISCNAMREENTEMMQMGKFFDLTNKRTRANFFFVNIFPKLAKRLRMKVTP
QFISNFFIPMIQQTYEYRIKNDDNRNDFLSLLIQIKKYGKLKDEEMENVGTMTFNELIAQ
SFIFFIAGFETSSTTMTMALYELAYRHDIQEKLRNEIEEITRQYDGKISYEAINNMPYLD
QVVNETLRLYSPIGQLFRIAIKDYKVPDSNLIIEKGTSIFIPVHAIHHDCRYFYDPENFI
PERFEQEKMKKLPQLCFLPFGAGNRNCIGMRFGLMQTKVGIASIFKNFKLSHHKLTRYPL
VLDPKSAVVNSLKPILIEAERIF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g62.t1 Gene3D G3DSA:1.10.630.10 Cytochrome p450 15 502 4.5E-131
2 g62.t1 PANTHER PTHR24292 CYTOCHROME P450 8 501 6.9E-177
3 g62.t1 PANTHER PTHR24292:SF95 CYP6A16, ISOFORM B-RELATED 8 501 6.9E-177
4 g62.t1 PRINTS PR00463 E-class P450 group I signature 88 109 1.9E-17
5 g62.t1 PRINTS PR00463 E-class P450 group I signature 296 313 1.9E-17
13 g62.t1 PRINTS PR00385 P450 superfamily signature 307 324 2.5E-12
8 g62.t1 PRINTS PR00463 E-class P450 group I signature 316 342 1.9E-17
12 g62.t1 PRINTS PR00385 P450 superfamily signature 361 372 2.5E-12
9 g62.t1 PRINTS PR00463 E-class P450 group I signature 402 426 1.9E-17
6 g62.t1 PRINTS PR00463 E-class P450 group I signature 437 447 1.9E-17
11 g62.t1 PRINTS PR00385 P450 superfamily signature 438 447 2.5E-12
7 g62.t1 PRINTS PR00463 E-class P450 group I signature 447 470 1.9E-17
10 g62.t1 PRINTS PR00385 P450 superfamily signature 447 458 2.5E-12
1 g62.t1 Pfam PF00067 Cytochrome P450 36 493 3.0E-99
17 g62.t1 Phobius SIGNAL_PEPTIDE Signal peptide region 1 16 -
18 g62.t1 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
19 g62.t1 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 11 -
20 g62.t1 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 12 16 -
16 g62.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 17 503 -
22 g62.t1 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 440 449 -
14 g62.t1 SUPERFAMILY SSF48264 Cytochrome P450 33 484 1.02E-107
21 g62.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 2 20 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values