General information for g6209.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g6209 is located on chr_2: 15266416..15272034 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6209 | g6209.t10 | TSS | g6209.t10 | 15265504 | 15265504 |
| chr_2 | g6209 | g6209.t10 | isoform | g6209.t10 | 15265527 | 15266677 |
| chr_2 | g6209 | g6209.t10 | exon | g6209.t10.exon1 | 15265527 | 15265529 |
| chr_2 | g6209 | g6209.t10 | exon | g6209.t10.exon2 | 15265871 | 15266041 |
| chr_2 | g6209 | g6209.t10 | cds | g6209.t10.CDS1 | 15266026 | 15266041 |
| chr_2 | g6209 | g6209.t10 | exon | g6209.t10.exon3 | 15266302 | 15266369 |
| chr_2 | g6209 | g6209.t10 | cds | g6209.t10.CDS2 | 15266302 | 15266369 |
| chr_2 | g6209 | g6209.t10 | exon | g6209.t10.exon4 | 15266426 | 15266677 |
| chr_2 | g6209 | g6209.t10 | cds | g6209.t10.CDS3 | 15266426 | 15266677 |
| chr_2 | g6209 | g6209.t10 | TTS | g6209.t10 | 15266763 | 15266763 |
Sequences
>g6209.t10 Gene=g6209 Length=494
ATGGGTTTTACAAGATTCGTTGAAACCGGACGTATCGCACGTATTTCACGTGGACGCTAC
AAGGGAAAGCTGGTGGCGATTGTTGATGTCATTGATCAGAACAGAGTGAGTATAATAAAA
AACCAATTATCACAAAAATTTAACTTTTTCTGTTAATAATGATGAACCAGAATAAGGATT
TCAAGATTAAAGAAAAATGGAGTCAAACACTTTGGGCAGAACGCGCAAAAGCAAAGAGAT
TGCGTTCAAATTTGGATGATTTCGAGCGCTTCAAGTTGCGATTAGTTAAGCGTTCAAAGA
ATCGCATGATCGAGCCAGTCTTTTCAAAGCTCAAGAAAGAAGCATCTAAGAACGGCACAC
TCTATGGAAAACCTAAAAAGGGAACTAAACCATTGCCACCCAAGAAACCCAAAGTAGAAG
GAGCTAAGAAAAAGAAGAAGGTTAACAAGAAAAAACCTGGCAGTGCTGCAGCAAAGAAGC
CAGCCAAGAAGTAA
>g6209.t10 Gene=g6209 Length=111
MMNQNKDFKIKEKWSQTLWAERAKAKRLRSNLDDFERFKLRLVKRSKNRMIEPVFSKLKK
EASKNGTLYGKPKKGTKPLPPKKPKVEGAKKKKKVNKKKPGSAAAKKPAKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g6209.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 111 | - |
| 3 | g6209.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 111 | - |
| 1 | g6209.t10 | Pfam | PF01929 | Ribosomal protein L14 | 6 | 48 | 6.0E-9 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005840 | ribosome | CC |
| GO:0006412 | translation | BP |
| GO:0003735 | structural constituent of ribosome | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
