General information for g6214.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Folliculin-interacting protein 2.
Parent gene
- The parent gene g6214 is located on chr_2: 15291185..15292626 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6214 | g6214.t1 | TSS | g6214.t1 | 15285228 | 15285228 |
| chr_2 | g6214 | g6214.t1 | isoform | g6214.t1 | 15285382 | 15291185 |
| chr_2 | g6214 | g6214.t1 | exon | g6214.t1.exon1 | 15285382 | 15285452 |
| chr_2 | g6214 | g6214.t1 | cds | g6214.t1.CDS1 | 15285382 | 15285452 |
| chr_2 | g6214 | g6214.t1 | exon | g6214.t1.exon2 | 15287241 | 15287508 |
| chr_2 | g6214 | g6214.t1 | cds | g6214.t1.CDS2 | 15287241 | 15287508 |
| chr_2 | g6214 | g6214.t1 | exon | g6214.t1.exon3 | 15287568 | 15288554 |
| chr_2 | g6214 | g6214.t1 | cds | g6214.t1.CDS3 | 15287568 | 15288554 |
| chr_2 | g6214 | g6214.t1 | exon | g6214.t1.exon4 | 15288612 | 15288796 |
| chr_2 | g6214 | g6214.t1 | cds | g6214.t1.CDS4 | 15288612 | 15288796 |
| chr_2 | g6214 | g6214.t1 | exon | g6214.t1.exon5 | 15288853 | 15290656 |
| chr_2 | g6214 | g6214.t1 | cds | g6214.t1.CDS5 | 15288853 | 15290656 |
| chr_2 | g6214 | g6214.t1 | exon | g6214.t1.exon6 | 15290709 | 15291185 |
| chr_2 | g6214 | g6214.t1 | cds | g6214.t1.CDS6 | 15290709 | 15291185 |
| chr_2 | g6214 | g6214.t1 | TTS | g6214.t1 | 15291265 | 15291265 |
Sequences
>g6214.t1 Gene=g6214 Length=3792
ATGGCATTATTTAATAAACTTTTTAATAAACGCAAATTAGTGAAGCAGTCTTCAAATCAA
TCATCATCGAGTCAATTTCCATTCAACAAGGAACAAGTGCGAATATTGTTATTTAGAGAA
TGTGACTGGCGAGGAAGAAGATTGTTGTTTGACTCAAGTGGAATTGAAGCTGTAACAACA
ACACAAGCAGCAGCAACTGCTACCACACCAGGGAATTCTTTATCACCTCAATGTCAGCAA
CAACAGCAGTGTACAGCAACAAATTCAGTTCAAAAGAAATCATCTCCACTTAAGCCAGAT
AAGAGTACCATTGAATATTTTGAAGGAAAACCATACAAATATGGACGACCAACTCAAGAT
GTCAATCAGATTGCCGAAATGGTTTTTGGATCGGTTGCCATTTCATTTCGAGGAACATCA
TTCAAAGTGCATTGGTTGCAAACACCAGCTAGAGCTCTTTGTTCGCAAGTTTTCTTGGCA
CCCGTTCAACCATATTCATCGACATCATCATCGTCAACAAACACGCATTCATCATCGGGC
ATTCAAACTCATTCCTCAAATTATGGATCTGATATGATAAGTCTTAGTGGTTCCATGTCG
GAATCAAATTCACTCAATTCATTTTCTGCGAGCGAAAGTTTGCATAATGGAGTGACTCGA
AGCACAAATCCTCTTGATGTTCCCACTGCCTTGTCATTAGACAATGATGATTTTAAATTT
ATATCGCAAAGTATTGGTGATAGTTCAGGTTATAATAGTTCTGAGCTTTGGACTCAATTG
CGACATAATAATCCTTATTCTTCTGCACGCTCTAGTTTAGCATCAATTTATAGTGACATT
GAAAATCATAGTCGCAAAATGAGCATTTCCTCATCTGTATCAGAATATCCGAGCTGTGAA
TTTGGGCATTTAAATAGACGAATTATGAAGAATCTTTCGACATCATTTGAAAATGTCTCA
ACAATTACTGAGAATATGTCAAATATTGTTGAAAATAATTATTATACTGTTTCGGGTGCA
ATTGGTTTAAGTGATGGCTGTGTCTCAAAATTGAGAAGAAATAGTGAAATTGTAGTTGAT
GCAAGAAGAAAGACTACAAGTGGTGATGCACTTTCATCGAATTCATCAACACTTCATCAT
AGTCACAATAGAGCATACACAAAGCGACCACGTTTGGCTGTTGCAGTATGCATAAATATG
AGTGAGTGTGTCGAACAAGAAATGCTAATGTTTTGTTCAGAACATATGGCATTATTGGAA
CAAATGATTTATAGACTTAGAGCTGCTGCTGAAAATGCTTATATAAATCGACAAAATTTT
CTTCAATTGATGATCAAATGTTGGCATATAACAGCTCAATGGTTGGTGGATCTTTTTTCA
GCTCCACGTTTGACACTTCCTGTTTGGCTTAGTTTAAGCACTGGTGTAAAAAATTCAAAT
ACACTCGCATGCTCTTTTATGCAAGACCTTTGTCAACTTCTTAATACTGCTGACACTAAA
GATACAAATTTTTTTATTAGCACACTTTTAACTGCAGTATTGACTCATCATTTGGGTTGG
ATTAGTACAGTCAAGTTTATCACATCAAATATCAAAGAGAGCTTGAACAAAAATGGCTCA
AGTCATATCACAAAATTGATTGAAGAGGAAAACTTGAAATTATCTGAAATCTCAAAGATT
TTTCCTTATAATTCACTTTGGGCTCAATTAGGTGATTTATATGGTGCAATAACAAATCCA
ATTAAATTGAGTAAAACAATCATTTGTGGAAATGAAGCTCATGTGAAAACTATTGAGAAA
ATTTTAAATGTTTTAACTTACTTCATAAGATGTAGTGAAATAAGAAGAAATACACATACA
AAAGTCTTTGATAAAGATGAATTGAATAAAATTGTCAATCAACAATTGAATCAGAGAAAA
ACTGTGAGAAATTTAAAAGTTGGTGCAAATGCTGAAGTGCATGCAACATTTAAAGGTTTA
AGAAAGAGTGGTGCAAGTGGACTAACAAGAACATCAACGACTGTGAAAGAATTGAATAAA
GTTTTACAAGAACAAGAATCAAATAATACAAGTGTCGATGATTTTAGTGACCTCGATCCT
GAAACTTATAGGCTGCTTATGAACATTCTTAAGAAAAATGTTATGAATGATATTCCAAAA
GTACTTGCGTTTCGTGATTCGCGTTTTGTAAAGCAAGAGTTGAGAATAGGAAATGCCAGC
ATGGATACCGGTATCGAAATGTCTGCCAAAGATCGTCAATATTTAAGCTCAAATTATCAA
AAAGTCACTGGTGATCATATTAAGTTAACAGTAACTCGTCCAGACAATGATGGCATTGAA
GAAACAATAGAATTTGATGATGATGGTGAACTACAAAATCAACTTGCCAACTTTATTAGT
TTATCAAATCTCATCACTGAAAATTCTCTTGGTGGTGCACAGATGAAAATGAAAATGTTT
TGGGAAAAGAATCAATGCAATGAAGCATTGAATTTAGAACAAATTAAGCATCTAGAAAGA
ATACAGGCTAAACATCAAATGCAAGAAGAGAATGAAAAGTTGAAATCAATTCCAGAAAAA
TTGGAAGAAACTGAAAGCCATGTGAGTGAAATTGGAAGTAGTAGTGGTGTAGTTTTTGTT
TTGGGTGATAATGAGCAACTAATAGGATTAAGATCAAGTCCATCAATACAAACAATTTCA
TGTACTGATGATGGCGTTTATCCGAGTACTTCAACTGCTGCTATTGGCGCAATTAAAAAA
TCTTGCAAACACAAGAAAAAGCATTCCGGTGTAAAATTTAATTTTGAAAAATATCCTCAA
ATTGCAACAAATTACATGAAGAGTAAAAATTTAGAATTTAGTGAACTTGAAGTGTTGGAA
AAAGGTTTAAGAATGGAAAAAGAAGAATCGTGTTCAAGTCAATTAAAATCAAATTTTTCA
TCAAATCTTACATTGCAGTCTCAAGATAGCAGTGATTCTGATGATGAATGTGAATGTTGT
AGAAATGGAGGTGAAGCAAGCAGTTATTTGCAAACACCATCAAATGCAACAGAACTTGAA
TTTTCAAGTGATCAATCACATGATAGCATTTATGTGCCATCTTCATCAAGCAAAGAAACA
TTGAATGATTCATTTTTGAAAACATTAGATGAAAATAGAGAATTGAAATCAGTTGATGAT
ATTAGAGTTATTGAAATTCCAATGCTGGACAGTATAAAAAAGCAAAGTGTTCAAGATGAA
ATTTTGAAACCAGGTTTTACATCGTCATTATTCACTTCAACTACAGATCATTATATATCT
GATATGATTTTACAGGGAATAACTGCGCCTCCATTAAAATGGGAGCTTCAATTAAAGAAC
GATTTATCAATATCATCTCATTGTGGCGTTCTAGAGCAATCGCAGGCAGAGAATATTGCA
ATTGTAGCTAACATAGATAAATGGGATGTGCGACTTATTTCATCACATTCAAATGCTCTG
CCTTCACACAATACAGTAACAGGAATTATAGGCATGTCACAATTAGTTGGAAATATGTTA
GAATGTGTTCAGGCGATGTTTAATTCAGGCATATCAGAATTTCAATGCCTTTCATTTATA
GAATCAAAACTACGTGAAATGTATATTCACTCGGAAACGCTAGCCACATTTTTAATGGAC
ACAGAATTTTGTTCATTAAATACTTTAACTACAACTTTAGGGTTGTCAATTAATGATATT
CCTCTATTGATGTCAATTGCTTCAATACATTCGCCTCAAATCACCAAGAAATATGGAATT
TCCTTTCGATAA
>g6214.t1 Gene=g6214 Length=1263
MALFNKLFNKRKLVKQSSNQSSSSQFPFNKEQVRILLFRECDWRGRRLLFDSSGIEAVTT
TQAAATATTPGNSLSPQCQQQQQCTATNSVQKKSSPLKPDKSTIEYFEGKPYKYGRPTQD
VNQIAEMVFGSVAISFRGTSFKVHWLQTPARALCSQVFLAPVQPYSSTSSSSTNTHSSSG
IQTHSSNYGSDMISLSGSMSESNSLNSFSASESLHNGVTRSTNPLDVPTALSLDNDDFKF
ISQSIGDSSGYNSSELWTQLRHNNPYSSARSSLASIYSDIENHSRKMSISSSVSEYPSCE
FGHLNRRIMKNLSTSFENVSTITENMSNIVENNYYTVSGAIGLSDGCVSKLRRNSEIVVD
ARRKTTSGDALSSNSSTLHHSHNRAYTKRPRLAVAVCINMSECVEQEMLMFCSEHMALLE
QMIYRLRAAAENAYINRQNFLQLMIKCWHITAQWLVDLFSAPRLTLPVWLSLSTGVKNSN
TLACSFMQDLCQLLNTADTKDTNFFISTLLTAVLTHHLGWISTVKFITSNIKESLNKNGS
SHITKLIEEENLKLSEISKIFPYNSLWAQLGDLYGAITNPIKLSKTIICGNEAHVKTIEK
ILNVLTYFIRCSEIRRNTHTKVFDKDELNKIVNQQLNQRKTVRNLKVGANAEVHATFKGL
RKSGASGLTRTSTTVKELNKVLQEQESNNTSVDDFSDLDPETYRLLMNILKKNVMNDIPK
VLAFRDSRFVKQELRIGNASMDTGIEMSAKDRQYLSSNYQKVTGDHIKLTVTRPDNDGIE
ETIEFDDDGELQNQLANFISLSNLITENSLGGAQMKMKMFWEKNQCNEALNLEQIKHLER
IQAKHQMQEENEKLKSIPEKLEETESHVSEIGSSSGVVFVLGDNEQLIGLRSSPSIQTIS
CTDDGVYPSTSTAAIGAIKKSCKHKKKHSGVKFNFEKYPQIATNYMKSKNLEFSELEVLE
KGLRMEKEESCSSQLKSNFSSNLTLQSQDSSDSDDECECCRNGGEASSYLQTPSNATELE
FSSDQSHDSIYVPSSSSKETLNDSFLKTLDENRELKSVDDIRVIEIPMLDSIKKQSVQDE
ILKPGFTSSLFTSTTDHYISDMILQGITAPPLKWELQLKNDLSISSHCGVLEQSQAENIA
IVANIDKWDVRLISSHSNALPSHNTVTGIIGMSQLVGNMLECVQAMFNSGISEFQCLSFI
ESKLREMYIHSETLATFLMDTEFCSLNTLTTTLGLSINDIPLLMSIASIHSPQITKKYGI
SFR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g6214.t1 | Coils | Coil | Coil | 668 | 688 | - |
| 4 | g6214.t1 | PANTHER | PTHR21634 | UNCHARACTERIZED | 13 | 1262 | 6.5E-203 |
| 5 | g6214.t1 | PANTHER | PTHR21634:SF9 | RE13835P | 13 | 1262 | 6.5E-203 |
| 10 | g6214.t1 | PRINTS | PR02073 | Folliculin-interacting protein 1 signature | 411 | 431 | 1.6E-10 |
| 8 | g6214.t1 | PRINTS | PR02073 | Folliculin-interacting protein 1 signature | 544 | 568 | 1.6E-10 |
| 9 | g6214.t1 | PRINTS | PR02073 | Folliculin-interacting protein 1 signature | 1087 | 1104 | 1.6E-10 |
| 7 | g6214.t1 | PRINTS | PR02073 | Folliculin-interacting protein 1 signature | 1130 | 1148 | 1.6E-10 |
| 6 | g6214.t1 | PRINTS | PR02073 | Folliculin-interacting protein 1 signature | 1170 | 1186 | 1.6E-10 |
| 3 | g6214.t1 | Pfam | PF14636 | Folliculin-interacting protein N-terminus | 32 | 152 | 3.0E-15 |
| 2 | g6214.t1 | Pfam | PF14637 | Folliculin-interacting protein middle domain | 381 | 614 | 5.9E-75 |
| 1 | g6214.t1 | Pfam | PF14638 | Folliculin-interacting protein C-terminus | 1068 | 1255 | 4.1E-56 |
| 12 | g6214.t1 | ProSiteProfiles | PS51836 | Tripartite DENN FNIP1/2-type domain profile. | 28 | 1250 | 13.072 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K20401 (folliculin-interacting protein 2)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
