Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Protein windbeutel.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6216 g6216.t2 TSS g6216.t2 15292861 15292861
chr_2 g6216 g6216.t2 isoform g6216.t2 15292958 15293891
chr_2 g6216 g6216.t2 exon g6216.t2.exon1 15292958 15293079
chr_2 g6216 g6216.t2 cds g6216.t2.CDS1 15292958 15293079
chr_2 g6216 g6216.t2 exon g6216.t2.exon2 15293140 15293396
chr_2 g6216 g6216.t2 cds g6216.t2.CDS2 15293140 15293396
chr_2 g6216 g6216.t2 exon g6216.t2.exon3 15293455 15293891
chr_2 g6216 g6216.t2 cds g6216.t2.CDS3 15293455 15293663
chr_2 g6216 g6216.t2 TTS g6216.t2 NA NA

Sequences

>g6216.t2 Gene=g6216 Length=816
ATGCAGTTATTTACAATTATCTTGTCATTTTCATTGATCAATTTGAGTTTAGCATGTTCC
GGCTGCATAGATTTAGATGAATTGACTTTTGAAAAAATTTTAAGTAAATTTAAAACAGCA
TTGGTAAAATTTGATCAATCATTTCCATATGGAGAAAATCATGAAGCTTTTGCTGCTTTT
TCTCAACAAATTAACAATTTGACATACACAGAGACTACAAATCATCCTGATGTCTTAATT
GCAACAGTTGGTGTTAAAGACTATGGTGATATGGAAAATAAAAAGTTAGCAGACAAATAT
GGAGTCAGTGTTGAAGCATTTCCAGCCATCAAGCTATTTAATGATGGAAATTTGGAACAA
CCCATAAGTTTTGATTTAGGAAAAGAGAAATTAACTGTGAGCAAATTGTTTCTATTTTTG
AAAGAGCATGCATCAGCTTATGTTAAAGCACCAGGTTGTAATGAAGAACTTGATGAATTG
TCTAAGCAATTTATGGCTAAAAAAAGTGATAAGAATAGTATTTTAAAGAAAGCAAAGGCT
ATTGTAGAAAAGGTTTGTTTTGATAATCAATTAACAAGTGCTATATAATTGACTTCTTTC
ACTTTTCAGAAAAAGAGTATAGCTAAATTTTATGTAACATTAATGAAGAACTCAATCGAA
AAGGGTAAAGAATTCATTGCACTTCAACAAGAACGTATGACGAAACTTTTGGGAGATAAG
ATAAGTGAGAAAAAGTCTGAAGAAATTAACAAGAAACTGAATATTTTAATGTCGTTTAAA
AAATATGATCAAGAGAATAAGAAGGAGGAGTTATAA

>g6216.t2 Gene=g6216 Length=195
MQLFTIILSFSLINLSLACSGCIDLDELTFEKILSKFKTALVKFDQSFPYGENHEAFAAF
SQQINNLTYTETTNHPDVLIATVGVKDYGDMENKKLADKYGVSVEAFPAIKLFNDGNLEQ
PISFDLGKEKLTVSKLFLFLKEHASAYVKAPGCNEELDELSKQFMAKKSDKNSILKKAKA
IVEKVCFDNQLTSAI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g6216.t2 Gene3D G3DSA:3.40.30.10 Glutaredoxin 10 149 2.0E-33
3 g6216.t2 PANTHER PTHR12211:SF0 ENDOPLASMIC RETICULUM RESIDENT PROTEIN 29 5 187 1.8E-40
4 g6216.t2 PANTHER PTHR12211 ENDOPLASMIC RETICULUM PROTEIN ERP29 5 187 1.8E-40
2 g6216.t2 Pfam PF07912 ERp29, N-terminal domain 18 149 6.8E-37
9 g6216.t2 Phobius SIGNAL_PEPTIDE Signal peptide region 1 18 -
10 g6216.t2 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
11 g6216.t2 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 13 -
12 g6216.t2 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 14 18 -
8 g6216.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 19 195 -
5 g6216.t2 SUPERFAMILY SSF52833 Thioredoxin-like 20 143 2.96E-13
6 g6216.t2 SignalP_EUK SignalP-noTM SignalP-noTM 1 18 -
1 g6216.t2 SignalP_GRAM_NEGATIVE SignalP-noTM SignalP-noTM 1 18 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005788 endoplasmic reticulum lumen CC
GO:0009306 protein secretion BP
GO:0005783 endoplasmic reticulum CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed