General information for g6216.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g6216 is located on chr_2: 15293891..15297365 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6216 | g6216.t7 | TSS | g6216.t7 | 15292861 | 15292861 |
| chr_2 | g6216 | g6216.t7 | isoform | g6216.t7 | 15293140 | 15293891 |
| chr_2 | g6216 | g6216.t7 | exon | g6216.t7.exon1 | 15293140 | 15293396 |
| chr_2 | g6216 | g6216.t7 | cds | g6216.t7.CDS1 | 15293288 | 15293396 |
| chr_2 | g6216 | g6216.t7 | exon | g6216.t7.exon2 | 15293455 | 15293631 |
| chr_2 | g6216 | g6216.t7 | cds | g6216.t7.CDS2 | 15293455 | 15293631 |
| chr_2 | g6216 | g6216.t7 | exon | g6216.t7.exon3 | 15293685 | 15293891 |
| chr_2 | g6216 | g6216.t7 | cds | g6216.t7.CDS3 | 15293685 | 15293686 |
| chr_2 | g6216 | g6216.t7 | TTS | g6216.t7 | NA | NA |
Sequences
>g6216.t7 Gene=g6216 Length=641
GGTAAAATTTGATCAATCATTTCCATATGGAGAAAATCATGAAGCTTTTGCTGCTTTTTC
TCAACAAATTAACAATTTGACATACACAGAGACTACAAATCATCCTGATGTCTTAATTGC
AACAGTTGGTGTTAAAGACTATGGTGATATGGAAAATAAAAAGTTAGCAGACAAATATGG
AGTCAGTGTTGAAGCATTTCCAGCCATCAAGCTATTTAATGATGGAAATTTGGAACAACC
CATAAGTTTTGATTTAGGAAAAGAGAAATTAACTGTGAGCAAATTGTTTCTATTTTTGAA
AGAGCATGCATCAGCTTATGTTAAAGCACCAGGTTGTAATGAAGAACTTGATGAATTGTC
TAAGCAATTTATGGCTAAAAAAAGTGATAAGAATAGTATTTTAAAGAAAGCAAAGGCTAT
TGTAGAAAAGGTTTAAAAAGAGTATAGCTAAATTTTATGTAACATTAATGAAGAACTCAA
TCGAAAAGGGTAAAGAATTCATTGCACTTCAACAAGAACGTATGACGAAACTTTTGGGAG
ATAAGATAAGTGAGAAAAAGTCTGAAGAAATTAACAAGAAACTGAATATTTTAATGTCGT
TTAAAAAATATGATCAAGAGAATAAGAAGGAGGAGTTATAA
>g6216.t7 Gene=g6216 Length=95
MENKKLADKYGVSVEAFPAIKLFNDGNLEQPISFDLGKEKLTVSKLFLFLKEHASAYVKA
PGCNEELDELSKQFMAKKSDKNSILKKAKAIVEKV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g6216.t7 | Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 1 | 59 | 0.0e+00 |
| 2 | g6216.t7 | PANTHER | PTHR12211:SF0 | ENDOPLASMIC RETICULUM RESIDENT PROTEIN 29 | 2 | 94 | 0.0e+00 |
| 3 | g6216.t7 | PANTHER | PTHR12211 | ENDOPLASMIC RETICULUM PROTEIN ERP29 | 2 | 94 | 0.0e+00 |
| 1 | g6216.t7 | Pfam | PF07912 | ERp29, N-terminal domain | 2 | 59 | 0.0e+00 |
| 4 | g6216.t7 | SUPERFAMILY | SSF52833 | Thioredoxin-like | 3 | 55 | 3.7e-05 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005788 | endoplasmic reticulum lumen | CC |
| GO:0009306 | protein secretion | BP |
| GO:0005783 | endoplasmic reticulum | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
