Gene loci information

Transcript annotation

  • This transcript has been annotated as Glutathione S-transferase 1-1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6244 g6244.t2 TSS g6244.t2 15598286 15598286
chr_2 g6244 g6244.t2 isoform g6244.t2 15598348 15599048
chr_2 g6244 g6244.t2 exon g6244.t2.exon1 15598348 15598376
chr_2 g6244 g6244.t2 cds g6244.t2.CDS1 15598348 15598376
chr_2 g6244 g6244.t2 exon g6244.t2.exon2 15598457 15599048
chr_2 g6244 g6244.t2 cds g6244.t2.CDS2 15598457 15599048
chr_2 g6244 g6244.t2 TTS g6244.t2 15599086 15599086

Sequences

>g6244.t2 Gene=g6244 Length=621
ATGTGTGATTTATATTATACACCCGGTAAAGTGGTTCAGATGGTAGCACATGCATTGAAA
GTGAAACTCAATTTGAAGCCATTAAACCTTCAACAAAAAGAACATCTTGCACCAGAATTT
TTAAAACTCAATCCACAACATACAGTTCCGACTCTTGTCGACAATAATTTTGCACTTTGG
GAATCACGTCCGATTGCAATTTATTTGGTGGAAAAATACGCAAAAGATGATTCACTTTAT
CCGAAGAATGCAAAACAACGAGCTGTGGTGAATCAACAATTATATTTTGACATGGGAACA
CTTTCAAAACGAATGTATGATTTTTTCTATCCACAATTAATGCAAAATGCTGAGGCTGAT
CCAAAAAAGTTCAAAGAACTTGAAGAAGCTGTTGAATTTTTGGAAACAAGTTTAAGCAAA
TCAACATATGCAGCGGGTGAAAAGTTAACAATTGCTGATTTTGCGTTAGCAGTAACAACA
AGCATGTGTGTATTGACTGGTTATGATCTCAGCAAATATTCCAACATTACACGATGGTAT
CAATTAATGAAAGATGAATTACCTGGTTGGGAAATTAATGAAGAAGGATTAAATGTGATG
AGACAATATATGAAGAAATAA

>g6244.t2 Gene=g6244 Length=206
MCDLYYTPGKVVQMVAHALKVKLNLKPLNLQQKEHLAPEFLKLNPQHTVPTLVDNNFALW
ESRPIAIYLVEKYAKDDSLYPKNAKQRAVVNQQLYFDMGTLSKRMYDFFYPQLMQNAEAD
PKKFKELEEAVEFLETSLSKSTYAAGEKLTIADFALAVTTSMCVLTGYDLSKYSNITRWY
QLMKDELPGWEINEEGLNVMRQYMKK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g6244.t2 CDD cd03045 GST_N_Delta_Epsilon 3 71 0.000
11 g6244.t2 CDD cd03177 GST_C_Delta_Epsilon 85 198 0.000
8 g6244.t2 Gene3D G3DSA:3.40.30.10 Glutaredoxin 4 76 0.000
7 g6244.t2 Gene3D G3DSA:1.20.1050.10 - 77 206 0.000
3 g6244.t2 PANTHER PTHR43969:SF9 GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED 4 205 0.000
4 g6244.t2 PANTHER PTHR43969 GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED 4 205 0.000
2 g6244.t2 Pfam PF02798 Glutathione S-transferase, N-terminal domain 12 70 0.000
1 g6244.t2 Pfam PF00043 Glutathione S-transferase, C-terminal domain 114 182 0.000
10 g6244.t2 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 1 77 15.907
9 g6244.t2 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 83 206 20.075
13 g6244.t2 SFLD SFLDG00358 Main (cytGST) 11 184 0.000
14 g6244.t2 SFLD SFLDS00019 Glutathione Transferase (cytosolic) 11 184 0.000
5 g6244.t2 SUPERFAMILY SSF52833 Thioredoxin-like 4 82 0.000
6 g6244.t2 SUPERFAMILY SSF47616 GST C-terminal domain-like 68 190 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values