Gene loci information

Transcript annotation

  • This transcript has been annotated as Glutathione S-transferase 1, isoform D.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6245 g6245.t8 TTS g6245.t8 15599039 15599039
chr_2 g6245 g6245.t8 isoform g6245.t8 15599209 15599935
chr_2 g6245 g6245.t8 exon g6245.t8.exon1 15599209 15599935
chr_2 g6245 g6245.t8 cds g6245.t8.CDS1 15599310 15599909
chr_2 g6245 g6245.t8 TSS g6245.t8 15600055 15600055

Sequences

>g6245.t8 Gene=g6245 Length=727
TTTCATCGCCATGTCGTCTAGTACAAATGACAGCTGCTGCATTGAACATCAAGTTAAATC
TTATAGAGATTGATCCATATCGAAAAGAACATTTAAGACCAAGTTTTTTGAAATTAAATC
CTCATCATACTGTGCCTGTTCTTGTTGATGGTGATTTTGTTCTTTATGAATCAAGACCAA
TTTGCATTTATTTAATTGAAAAATATAGTAAAGATGATTCACTTTATCCTCGTGATCCTA
AAAGACGTGCAATTGTTAATCAAAGACTTTATTTTGATATGGCGACACTCTTTCAAAGGT
TTGCAGAATATTATTATCCTCAAGTATTAAAAAAATTACCGGCTGATAAGGAAAGATTAA
AATCATTTGAAGAAGCAATGAAAATATTGGAATTATTTTTAGACAAACAAAAGTTTGTTG
CGCATACAGATAAAATGACAATAGCTGATATCTCAATTGCTGCAACAATCAACACTTGTG
AACTTGGTGGCTATAATTTGAGTAGATATCCAAATATTTTCAAATGGTATACAATGATGA
AAACTATTTGTCCTGGATGGAGTGTTAATTTAAAAGCTGCTGGAATGATGAAGCACTATA
CTACCAAAATTTCTTATGATTTGTAAAATGAAAATTGAATGTAACGGTTGAAATTTAAAA
TAATTTACATTTTTGCAAAAGCAAACAAAGCATTAAATTAAAGAAAATTCAGAAGTTTAA
TAGTTTA

>g6245.t8 Gene=g6245 Length=199
MTAAALNIKLNLIEIDPYRKEHLRPSFLKLNPHHTVPVLVDGDFVLYESRPICIYLIEKY
SKDDSLYPRDPKRRAIVNQRLYFDMATLFQRFAEYYYPQVLKKLPADKERLKSFEEAMKI
LELFLDKQKFVAHTDKMTIADISIAATINTCELGGYNLSRYPNIFKWYTMMKTICPGWSV
NLKAAGMMKHYTTKISYDL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g6245.t8 CDD cd03177 GST_C_Delta_Epsilon 72 189 0.000000
8 g6245.t8 Gene3D G3DSA:3.40.30.10 Glutaredoxin 1 63 0.000000
7 g6245.t8 Gene3D G3DSA:1.20.1050.10 - 64 194 0.000000
3 g6245.t8 PANTHER PTHR43969:SF9 GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED 1 191 0.000000
4 g6245.t8 PANTHER PTHR43969 GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED 1 191 0.000000
1 g6245.t8 Pfam PF13417 Glutathione S-transferase, N-terminal domain 5 61 0.000000
2 g6245.t8 Pfam PF14497 Glutathione S-transferase, C-terminal domain 91 172 0.000011
10 g6245.t8 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 1 64 17.750000
9 g6245.t8 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 70 195 18.036000
12 g6245.t8 SFLD SFLDG00358 Main (cytGST) 2 172 0.000000
13 g6245.t8 SFLD SFLDS00019 Glutathione Transferase (cytosolic) 2 172 0.000000
5 g6245.t8 SUPERFAMILY SSF52833 Thioredoxin-like 2 74 0.000000
6 g6245.t8 SUPERFAMILY SSF47616 GST C-terminal domain-like 70 173 0.000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed