General information for g6249.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Run domain Beclin-1-interacting and cysteine-rich domain-containing protein.
Parent gene
- The parent gene g6249 is located on chr_2: 15611989..15616990 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6249 | g6249.t3 | TTS | g6249.t3 | 15608963 | 15608963 |
| chr_2 | g6249 | g6249.t3 | isoform | g6249.t3 | 15609690 | 15611230 |
| chr_2 | g6249 | g6249.t3 | exon | g6249.t3.exon1 | 15609690 | 15611230 |
| chr_2 | g6249 | g6249.t3 | cds | g6249.t3.CDS1 | 15609692 | 15611203 |
| chr_2 | g6249 | g6249.t3 | TSS | g6249.t3 | 15611404 | 15611404 |
Sequences
>g6249.t3 Gene=g6249 Length=1541
GTCGCTCGCAAATCTATCTTATCACATATGAAAAAAGTCTCAAGGACGTTAGATTTCGTC
TGTGTTGGTAATGAAGCTAAAGTGAAAGTTAAGCTTAGACGAACAAAAAGTTTACCGAAT
CTGAGTCATGAATCTTTAAACAATCGTCCAAGATCAAAAACAATTAATGCTCAATGTGCA
CTGAAATTTCAAAAGAAAGTTTCATTCAAAAATGAAATTGCAAAGGATGTTACAGAACAA
GTGCCTTTCTTCGATTATAAAGAATCTCTTAATTTAAATAAACAATCTGTGCCTACTCCT
CAACCGCCATCAATTCATCTCGTCAAAGTTGATGATATTAAAATTCACACTGATTATCGA
TATTCATCCGAGTACAAAGCGAGTCTTTCATCAAGTCCAGCTTCAAGTTTTTCATCAAAA
ATTTCATTAACACCTAAACGATCATCATTTTTCAATCTTTTCGAAACTGCTTCTGATGTA
TGTAAAATTTCATCACCCGAATTATCGAACACAAGTCCGACTGATATTTTTTTTACTGAA
ACTGTCGTGTCTGGCTCTAAAATTCGATCAAAATCAACAATTTCACCGCCAAGTTTACTT
CAAGAGACTGGACATAGGAAAAAATCAAGTCGTCAAAATCTCGCACATTTTATTCACACG
CTCAACAGCTCACGACATAAGGTTGTTGAGTTAGAACGTGAGAATTTGCATTTTCATTTG
TCTGAGGCCATTATTGCAGCTTGCGAACAACTGAAATGGAACAAAATGTTCAATGAAAAA
TATAAAATTCCAAAAGATTGTCGCATCAAACAAAGTCTAACTCATACAACGCAAAAAGTT
ATTCAACCACCGCCTAAAATCAGAAATCCAGCAAAATTTACAATTGGTTCAGTTGAAGAT
GACACAGAATCAAGTTTATCATCAGATGAAGTTCCTAATCAACGTTCATCAAGTTCAGAA
GATATAAGTATTGAAAATACACCACAAATGGAATGGACATCATCCTTCGATACACATTCA
GCTGAAGGAATTGCAATAGCTTTAATGTCAAAATTCCAAAATCAAAAACTTCCTAGTGCC
AATAATTTATTATGGCTTGTGAACGAAACACAAGCACCGCAATCACTCTTGCCACTTCCT
GATAGCTTTCCAATTAATCCCGATGAAAATTTATCATTCAATGCCATTCGAGGAAATACA
ATGTGGGCAGCGCCTCGACCACAAATTATTTTCACTATTCATCCAGTGCCTGATCGAAAA
CGACAAATGTTTCAACAAGGAAATCGTTGTGCCGGATGTGGAATTAAAATTGCTGCAGCT
TATATTCATAAACTTCGCTATTGTGATTATATTGGAAAGTATTTCTGTACAGCATGTCAC
AAAAATCAAGTCTCTGTCATACCAGCGAGAGTATTAAATAAGTGGGATTTTGCATTAAAT
CCAGTCAGTAATTTTGCATATAAATGGCTTGATCAGATTTGGTCTTTGCCGCTTTTTCAT
GTAAGCGATTTAAATTCAAAGCTGTATCAGAAATCAAAACC
>g6249.t3 Gene=g6249 Length=504
MKKVSRTLDFVCVGNEAKVKVKLRRTKSLPNLSHESLNNRPRSKTINAQCALKFQKKVSF
KNEIAKDVTEQVPFFDYKESLNLNKQSVPTPQPPSIHLVKVDDIKIHTDYRYSSEYKASL
SSSPASSFSSKISLTPKRSSFFNLFETASDVCKISSPELSNTSPTDIFFTETVVSGSKIR
SKSTISPPSLLQETGHRKKSSRQNLAHFIHTLNSSRHKVVELERENLHFHLSEAIIAACE
QLKWNKMFNEKYKIPKDCRIKQSLTHTTQKVIQPPPKIRNPAKFTIGSVEDDTESSLSSD
EVPNQRSSSSEDISIENTPQMEWTSSFDTHSAEGIAIALMSKFQNQKLPSANNLLWLVNE
TQAPQSLLPLPDSFPINPDENLSFNAIRGNTMWAAPRPQIIFTIHPVPDRKRQMFQQGNR
CAGCGIKIAAAYIHKLRYCDYIGKYFCTACHKNQVSVIPARVLNKWDFALNPVSNFAYKW
LDQIWSLPLFHVSDLNSKLYQKSK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g6249.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 320 | - |
| 6 | g6249.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 320 | - |
| 2 | g6249.t3 | PANTHER | PTHR45971:SF3 | RUN DOMAIN BECLIN-1-INTERACTING AND CYSTEINE-RICH DOMAIN-CONTAINING PROTEIN | 177 | 504 | 4.7E-66 |
| 3 | g6249.t3 | PANTHER | PTHR45971 | PHOX (PX) DOMAIN-CONTAINING PROTEIN | 177 | 504 | 4.7E-66 |
| 1 | g6249.t3 | Pfam | PF13901 | Putative zinc-RING and/or ribbon | 437 | 503 | 1.2E-22 |
| 4 | g6249.t3 | SMART | SM01175 | DUF4206_2 | 437 | 504 | 1.6E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
