General information for g6249.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Run domain Beclin-1-interacting and cysteine-rich domain-containing protein.
Parent gene
- The parent gene g6249 is located on chr_2: 15611989..15616990 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6249 | g6249.t4 | isoform | g6249.t4 | 15609997 | 15611989 |
| chr_2 | g6249 | g6249.t4 | exon | g6249.t4.exon1 | 15609997 | 15611596 |
| chr_2 | g6249 | g6249.t4 | cds | g6249.t4.CDS1 | 15609998 | 15611596 |
| chr_2 | g6249 | g6249.t4 | exon | g6249.t4.exon2 | 15611780 | 15611989 |
| chr_2 | g6249 | g6249.t4 | cds | g6249.t4.CDS2 | 15611780 | 15611989 |
| chr_2 | g6249 | g6249.t4 | TSS | g6249.t4 | 15612105 | 15612105 |
| chr_2 | g6249 | g6249.t4 | TTS | g6249.t4 | NA | NA |
Sequences
>g6249.t4 Gene=g6249 Length=1810
ATGGAAGATAACAAAAATATCGAAAATAAGGATTTAGTGAAAATGGAGAAAATAAATGAA
GTATTACTGAAAGATTTGTTGAAAAGTGTTGAGGAATTTATAAACAAAAGAGAGAGTGAA
AAAATTACAGCATCAACATCTCAACTTACAGATCTTGCAGAAAACTTAAAGAAAATATTT
TACAGTCGTATTAAACTTTTAAATAAGAATGGAACACCCAATATGCGAAAAATATTTGGA
TTTATCACAGTAGAATTTATGAATGAATCTATAGAGAATCAACGACTACATTTCAACAAA
TGGCTTTTGGAAAACATTTTAAAATGCAAGCTATCAAATTTCCTCTCGTTCATTCTTTCA
GACTCTGAACATATAAACAATTTTTATGAATCAGATGCTTTCATTCGTTCGGAAGTATAT
CAAAATGCACTTATGAAGTGCGTATTAGCATTAGAATCTAATGAGAAACGTCATTTACCT
AAAATTGAAACATTTACATCATCGGAAAAATTCAAACCAGGTCATAGACGTTCCATTTCA
CAACCATTTATTTCACTAAACGAAAACAACGCAGCTGTCGCTCGCAAATCTATCTTATCA
CATATGAAAAAAGTCTCAAGGACGTTAGATTTCGTCTGTGTTGGTAATGAAGCTAAAGTG
AAAGTTAAGCTTAGACGAACAAAAAGTTTACCGAATCTGAGTCATGAATCTTTAAACAAT
CGTCCAAGATCAAAAACAATTAATGCTCAATGTGCACTGAAATTTCAAAAGAAAGTTTCA
TTCAAAAATGAAATTGCAAAGGATGTTACAGAACAAGTGCCTTTCTTCGATTATAAAGAA
TCTCTTAATTTAAATAAACAATCTGTGCCTACTCCTCAACCGCCATCAATTCATCTCGTC
AAAGTTGATGATATTAAAATTCACACTGATTATCGATATTCATCCGAGTACAAAGCGAGT
CTTTCATCAAGTCCAGCTTCAAGTTTTTCATCAAAAATTTCATTAACACCTAAACGATCA
TCATTTTTCAATCTTTTCGAAACTGCTTCTGATGTATGTAAAATTTCATCACCCGAATTA
TCGAACACAAGTCCGACTGATATTTTTTTTACTGAAACTGTCGTGTCTGGCTCTAAAATT
CGATCAAAATCAACAATTTCACCGCCAAGTTTACTTCAAGAGACTGGACATAGGAAAAAA
TCAAGTCGTCAAAATCTCGCACATTTTATTCACACGCTCAACAGCTCACGACATAAGGTT
GTTGAGTTAGAACGTGAGAATTTGCATTTTCATTTGTCTGAGGCCATTATTGCAGCTTGC
GAACAACTGAAATGGAACAAAATGTTCAATGAAAAATATAAAATTCCAAAAGATTGTCGC
ATCAAACAAAGTCTAACTCATACAACGCAAAAAGTTATTCAACCACCGCCTAAAATCAGA
AATCCAGCAAAATTTACAATTGGTTCAGTTGAAGATGACACAGAATCAAGTTTATCATCA
GATGAAGTTCCTAATCAACGTTCATCAAGTTCAGAAGATATAAGTATTGAAAATACACCA
CAAATGGAATGGACATCATCCTTCGATACACATTCAGCTGAAGGAATTGCAATAGCTTTA
ATGTCAAAATTCCAAAATCAAAAACTTCCTAGTGCCAATAATTTATTATGGCTTGTGAAC
GAAACACAAGCACCGCAATCACTCTTGCCACTTCCTGATAGCTTTCCAATTAATCCCGAT
GAAAATTTATCATTCAATGCCATTCGAGGAAATACAATGTGGGCAGCGCCTCGACCACAA
ATTATTTTCA
>g6249.t4 Gene=g6249 Length=603
MEDNKNIENKDLVKMEKINEVLLKDLLKSVEEFINKRESEKITASTSQLTDLAENLKKIF
YSRIKLLNKNGTPNMRKIFGFITVEFMNESIENQRLHFNKWLLENILKCKLSNFLSFILS
DSEHINNFYESDAFIRSEVYQNALMKCVLALESNEKRHLPKIETFTSSEKFKPGHRRSIS
QPFISLNENNAAVARKSILSHMKKVSRTLDFVCVGNEAKVKVKLRRTKSLPNLSHESLNN
RPRSKTINAQCALKFQKKVSFKNEIAKDVTEQVPFFDYKESLNLNKQSVPTPQPPSIHLV
KVDDIKIHTDYRYSSEYKASLSSSPASSFSSKISLTPKRSSFFNLFETASDVCKISSPEL
SNTSPTDIFFTETVVSGSKIRSKSTISPPSLLQETGHRKKSSRQNLAHFIHTLNSSRHKV
VELERENLHFHLSEAIIAACEQLKWNKMFNEKYKIPKDCRIKQSLTHTTQKVIQPPPKIR
NPAKFTIGSVEDDTESSLSSDEVPNQRSSSSEDISIENTPQMEWTSSFDTHSAEGIAIAL
MSKFQNQKLPSANNLLWLVNETQAPQSLLPLPDSFPINPDENLSFNAIRGNTMWAAPRPQ
IIF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g6249.t4 | Gene3D | G3DSA:1.20.58.900 | - | 10 | 155 | 2.4E-6 |
| 7 | g6249.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 488 | 521 | - |
| 8 | g6249.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 521 | - |
| 2 | g6249.t4 | PANTHER | PTHR45971:SF3 | RUN DOMAIN BECLIN-1-INTERACTING AND CYSTEINE-RICH DOMAIN-CONTAINING PROTEIN | 64 | 387 | 7.0E-27 |
| 4 | g6249.t4 | PANTHER | PTHR45971 | PHOX (PX) DOMAIN-CONTAINING PROTEIN | 64 | 387 | 7.0E-27 |
| 3 | g6249.t4 | PANTHER | PTHR45971:SF3 | RUN DOMAIN BECLIN-1-INTERACTING AND CYSTEINE-RICH DOMAIN-CONTAINING PROTEIN | 420 | 603 | 7.0E-27 |
| 5 | g6249.t4 | PANTHER | PTHR45971 | PHOX (PX) DOMAIN-CONTAINING PROTEIN | 420 | 603 | 7.0E-27 |
| 1 | g6249.t4 | Pfam | PF02759 | RUN domain | 25 | 151 | 3.9E-7 |
| 10 | g6249.t4 | ProSiteProfiles | PS50826 | RUN domain profile. | 17 | 164 | 9.509 |
| 6 | g6249.t4 | SUPERFAMILY | SSF140741 | RUN domain-like | 18 | 155 | 1.57E-9 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
