General information for g6249.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g6249 is located on chr_2: 15611989..15616990 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6249 | g6249.t6 | isoform | g6249.t6 | 15611230 | 15611989 |
| chr_2 | g6249 | g6249.t6 | exon | g6249.t6.exon1 | 15611230 | 15611989 |
| chr_2 | g6249 | g6249.t6 | cds | g6249.t6.CDS1 | 15611231 | 15611584 |
| chr_2 | g6249 | g6249.t6 | TSS | g6249.t6 | 15612105 | 15612105 |
| chr_2 | g6249 | g6249.t6 | TTS | g6249.t6 | NA | NA |
Sequences
>g6249.t6 Gene=g6249 Length=760
ATGGAAGATAACAAAAATATCGAAAATAAGGATTTAGTGAAAATGGAGAAAATAAATGAA
GTATTACTGAAAGATTTGTTGAAAAGTGTTGAGGAATTTATAAACAAAAGAGAGAGTGAA
AAAATTACAGCATCAACATCTCAACTTACAGATCTTGCAGAAAACTTAAAGAAAATATTT
TACAGTCGTATTAAACTTTTAAATAAGAATGTAAGTTATCGTGCGTATTTCATCAGAAAA
ATGTTTATGCGCATTAATAATCTTTATTTGCTTTGTGTTTTGTTTAAAAATGCAACGTCA
ACATTAGACTGCATTTATGCCTTATCAAATGTATTTTTAAAGTGTACTGACCGATTTACT
TATGTATTTCAATGTCGCTTTTGTTTTTTTTAGGGAACACCCAATATGCGAAAAATATTT
GGATTTATCACAGTAGAATTTATGAATGAATCTATAGAGAATCAACGACTACATTTCAAC
AAATGGCTTTTGGAAAACATTTTAAAATGCAAGCTATCAAATTTCCTCTCGTTCATTCTT
TCAGACTCTGAACATATAAACAATTTTTATGAATCAGATGCTTTCATTCGTTCGGAAGTA
TATCAAAATGCACTTATGAAGTGCGTATTAGCATTAGAATCTAATGAGAAACGTCATTTA
CCTAAAATTGAAACATTTACATCATCGGAAAAATTCAAACCAGGTCATAGACGTTCCATT
TCACAACCATTTATTTCACTAAACGAAAACAACGCAGCTG
>g6249.t6 Gene=g6249 Length=118
MRKIFGFITVEFMNESIENQRLHFNKWLLENILKCKLSNFLSFILSDSEHINNFYESDAF
IRSEVYQNALMKCVLALESNEKRHLPKIETFTSSEKFKPGHRRSISQPFISLNENNAA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g6249.t6 | Gene3D | G3DSA:1.20.58.900 | - | 9 | 82 | 0.0000039 |
| 1 | g6249.t6 | Pfam | PF02759 | RUN domain | 18 | 78 | 0.0000011 |
| 4 | g6249.t6 | ProSiteProfiles | PS50826 | RUN domain profile. | 1 | 90 | 10.2520000 |
| 2 | g6249.t6 | SUPERFAMILY | SSF140741 | RUN domain-like | 19 | 81 | 0.0000001 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
