Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6255 g6255.t4 isoform g6255.t4 15632891 15634824
chr_2 g6255 g6255.t4 exon g6255.t4.exon1 15632891 15633591
chr_2 g6255 g6255.t4 cds g6255.t4.CDS1 15632891 15633591
chr_2 g6255 g6255.t4 exon g6255.t4.exon2 15633644 15633847
chr_2 g6255 g6255.t4 cds g6255.t4.CDS2 15633644 15633847
chr_2 g6255 g6255.t4 exon g6255.t4.exon3 15633901 15634824
chr_2 g6255 g6255.t4 cds g6255.t4.CDS3 15633901 15634525
chr_2 g6255 g6255.t4 TSS g6255.t4 15634629 15634629
chr_2 g6255 g6255.t4 TTS g6255.t4 15634859 15634859

Sequences

>g6255.t4 Gene=g6255 Length=1829
ATGACATTCTACAAATATGCAATTATTGTATGTGCTGGAATATTCTTAAGAACTACAATT
TCGTTACATTCTTATTCGGGACAAGGTAAAAAGCCGCTTTTTGGAGATTTTGAAGCACAA
CGGCATTGGCAAGAAGTTACAGTGAATTTACCCATAAAAGATTGGTATGAAAACACTACA
GATAATGATTTGTTATATTGGGGACTAGACTACCCACCATTAACTGCATATCACAGTTAT
TTAATTGGACAAACTGCGAAATTCGTCAATGAATCTTTTGTTGAACTTCACAAATCGAGA
GGAATTGAAACTGAAGAGCATAAGCAGTTTATGAGAATGACTGTACTTATTGCTGATATT
CTAATCTATATCCCTGCTATGCTATTGGCTTGCAATGTGATATTCTTTAGAATTTTAAAA
ATTAATGCTGAAAAAGGTGAAAGCTTTCATTGGCTTTATTTATGCATTGCCATTCTATAT
CCTGGACAAATTTTGATTGATAATGGACACTTTCAATACAATAATATTTCATTAGGATTC
ACTGTGATTGCTATTTCTGCAATCTTATGTGATCAACGACTTATTGGAGCAATATTCTTT
GTTTTCGCCTTAAATTACAAACAAATGGAGTTGTATCATGCTTTGCCTTTCTTTTGCTAT
CTTTTATCAACTTGTTTTATTGACCGTGAAAGACAAAAGAGTTTCACATTTATTACGGGA
ATCAAGAGACTTTCATTGCTTGGAATAGTTGTTGTGATTTCATTTCTCTTGATCTGGCTT
CCATGGTTGTCCTCACTCGAAAGTTTACTTCAAGTTGTTCATCGAATTTTTCCAATATAT
CGAGGAGTTTTTGAAGACAAAGTGTCAAATATTTGGTGCATTGTCAATGTTTTTATGAAA
ATCAAAGAAAATTTCACAAATGAGCAAATGGCAAAAATCTGCTTAATGTGCACAGCTACA
TCAATCGTTCCGAGTTCAATAACACTTCTGTTAAAACCAACAAAACGACAATTTCTTTAT
TCACTCATCAATTGTTCTCTTGCTTTCTTTCTCTTCTCGTTTCAAGTTCATGAGAAATCA
ATTTTAATTCCTGCTATTTCAGTTGCTTTGATCTTCTCACTTGAGCCATTCATGTCATTT
TGGTTTCTTCAAATTTCAACATTCAGCATGCTTCCATTATTGGTTAAAGATGGATTATTT
GCTGCATTTATTGGACTTTCTGGATTTACAATTCTTTTAGTTAAATTAATCATTGATGAA
TCGAAAGATCAGAAAAATAAGAATTCAAATTATTTACAAATTTTGTTGAAGATAAATAAT
TTAACAAGTAGAAAATGGCTTGAGAATTTCATGATATTCAGCTATCTGTTGTCGACAGTT
GTAGAAATAATTTTAATTTATGCATTTTTCTGTAAAAATCCACCAGAAAAGCTTCCATTT
TTACATCCTTTACTCATTTCTGCATTTAGTTGTTGTCATTTTCTCTTTTTTTTGATTTAT
TTCAATGTTAAGCAAATATTTTATGAATAAAGAATTTTTTTAATGACTTCAAGATTTAAA
TTTTTTTATTTCATTCCTGAAAACTTGTAAATTCCAAACTTTATAATTTAAATCTCCTTT
TCATCTAATTTTAGGAAGTTGAAGACTTAAGTGACGGATGTGGAGGAAAATTTGCTGCAA
TCATTGTTTCCGATCAATTTGCTGGTAAATCTTTGCTCGCACGACATCGCCTCGTTAATA
CAGCATTAGCTGAAGAACTCAAAGAAATTCACGCATTTTCACAAAAGACATTCACACCAG
AACAGTGGCAAGAACAACAGAATCAATAA

>g6255.t4 Gene=g6255 Length=509
MTFYKYAIIVCAGIFLRTTISLHSYSGQGKKPLFGDFEAQRHWQEVTVNLPIKDWYENTT
DNDLLYWGLDYPPLTAYHSYLIGQTAKFVNESFVELHKSRGIETEEHKQFMRMTVLIADI
LIYIPAMLLACNVIFFRILKINAEKGESFHWLYLCIAILYPGQILIDNGHFQYNNISLGF
TVIAISAILCDQRLIGAIFFVFALNYKQMELYHALPFFCYLLSTCFIDRERQKSFTFITG
IKRLSLLGIVVVISFLLIWLPWLSSLESLLQVVHRIFPIYRGVFEDKVSNIWCIVNVFMK
IKENFTNEQMAKICLMCTATSIVPSSITLLLKPTKRQFLYSLINCSLAFFLFSFQVHEKS
ILIPAISVALIFSLEPFMSFWFLQISTFSMLPLLVKDGLFAAFIGLSGFTILLVKLIIDE
SKDQKNKNSNYLQILLKINNLTSRKWLENFMIFSYLLSTVVEIILIYAFFCKNPPEKLPF
LHPLLISAFSCCHFLFFLIYFNVKQIFYE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g6255.t4 PANTHER PTHR12413:SF1 DOLICHYL PYROPHOSPHATE MAN9GLCNAC2 ALPHA-1,3-GLUCOSYLTRANSFERASE 6 506 5.0E-165
3 g6255.t4 PANTHER PTHR12413 DOLICHYL GLYCOSYLTRANSFERASE 6 506 5.0E-165
1 g6255.t4 Pfam PF03155 ALG6, ALG8 glycosyltransferase family 18 500 2.4E-139
23 g6255.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 5 -
29 g6255.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 6 25 -
17 g6255.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 26 114 -
34 g6255.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 115 136 -
25 g6255.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 137 147 -
35 g6255.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 148 166 -
19 g6255.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 167 177 -
31 g6255.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 178 205 -
22 g6255.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 206 210 -
30 g6255.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 211 228 -
15 g6255.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 229 239 -
37 g6255.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 240 259 -
21 g6255.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 260 278 -
38 g6255.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 279 298 -
13 g6255.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 299 309 -
33 g6255.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 310 331 -
24 g6255.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 332 336 -
36 g6255.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 337 354 -
16 g6255.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 355 360 -
32 g6255.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 361 383 -
26 g6255.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 384 397 -
39 g6255.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 398 418 -
14 g6255.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 419 449 -
28 g6255.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 450 470 -
20 g6255.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 471 481 -
27 g6255.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 482 503 -
18 g6255.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 504 509 -
10 g6255.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 114 136 -
7 g6255.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 149 166 -
4 g6255.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 181 203 -
6 g6255.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 244 263 -
11 g6255.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 337 354 -
9 g6255.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 361 383 -
12 g6255.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 398 417 -
8 g6255.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 449 471 -
5 g6255.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 481 503 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005783 endoplasmic reticulum CC
GO:0042281 dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase activity MF
GO:0016758 hexosyltransferase activity MF
GO:0006488 dolichol-linked oligosaccharide biosynthetic process BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values