Gene loci information

Transcript annotation

  • This transcript has been annotated as Tyrosine-protein kinase Shark.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6266 g6266.t2 isoform g6266.t2 15748701 15750317
chr_2 g6266 g6266.t2 exon g6266.t2.exon1 15748701 15749908
chr_2 g6266 g6266.t2 cds g6266.t2.CDS1 15748701 15749908
chr_2 g6266 g6266.t2 exon g6266.t2.exon2 15749978 15750317
chr_2 g6266 g6266.t2 cds g6266.t2.CDS2 15749978 15750194
chr_2 g6266 g6266.t2 TSS g6266.t2 15750482 15750482
chr_2 g6266 g6266.t2 TTS g6266.t2 NA NA

Sequences

>g6266.t2 Gene=g6266 Length=1548
ATGAGTCGAGATGAAAGTCTAGACTGGTTTCATGGTAGAATTTCGCGATTAGAGGCAGAG
AAAATTCTTCTTGAAGGTAAATTATGAATATTCTAGTTCATTAAATATTTACATTACTCA
TTCATGTATTTTTCTTTCTCTCAATTTTTACAAATATTAGAATCTCAAAAACTTGATATC
ACCGACAGTATTTTTCTTGTTCGTGAAAGTTCAACATTGGTTAATAACTATGTAGTATCC
GTTATATATCGAAATGAATTTTTTCATTATCAAATACAAAGACATGGAGATGATTCATTC
TTCTCCATTGACTCTCAATTCATTCATCACGGATTGGACGACTTGATTGAGTATTATAAG
CACAATGAATCGAATCTCTGTACAAAATTAGGAAAGTTTGTAAAAAAAGGTCCACCGCCA
TTAAAATATTGCAAATTAGGAAAAGCAAATTTGCTTCATCGTGCTACAAAGCATAACAAT
TTAAATGTTGTCAAAGAAATTTTATCGACATCATATCGAAATTTAGATGCAAAAAATGAA
AATGGAATGACAGCAGTTCGTTTAGCTGCAATAAATAAAATTAGTGCTGAAATTATGAAA
TTGCTCATAGAAAATGGAAGTGCCTTAGCAAGTAGAGACTCAGTTGGAAATACACCACTG
CATTATGCATGCAAATTTGAATGCAAAGAAATGGTTGAACTTTTAATTGATGCAAGTAAA
ACATTGATTTATGCTAGAAACACTTTTACACACGAAGTGCCATTACATGAAGCTGCCAAA
GTTGGAAATCTTGAAATTGTCAAAATTTTACTACAAAATAATGCAGCAAGTATGCCAAGA
GCTAATAATGGAAAACTTCCAATCAATTATGCAAGAGAGAAAGGGCATTATGATGTTGTT
GAATATTTGGAAAAATATGTGCCAGTTTGTAATACATTTAGCCATAAGTGGCATCATGGA
ACATTAGATAGAGAAGGGGCAAGAACTTTGTTATTGAAGAAAAGAAATGAACTTTATGAA
AAATATCGTGAAGAATATGCATTGGAAGAGAATGTCTATGTTAATGATAATAAAGAAATT
AATGATTTAATTTGTGGATTGTTCTTGGTAAGAACAAGTGAAAGAAATGGTGGATTAGAT
GTCATAACTATGCTTCATGATGACGATGACCTAAAAAATATTAGAAATTATGTAATTCAT
AAATCTGACAATTTAAAATATTTTTATATCGATGATGGACCATTTTTCACTTCATTAGAA
CATCTTATAAGCTATTACATGACTCATGCTGATGGGCTTCCAGCTAAATTAACACAATTT
GTGTCTCCAATCGTTCGTCCACCAATTCCAACTTTAACTCTACAGAAAAAGTCAAAATCT
ATGGTACAATCTCCAGCTGCTAGTACAAATTCAGTGTCATCACCTGAAAGTGCTAACAAT
TCAATAACAATGGAGTCTCAAACAAAAGCAAAATCATCAGTTTTCACTTTATTCAAGAAA
AAAAAGCATTCCCTTCCAACTTCACTCTCTAAAGAAGACAAACCATCA

>g6266.t2 Gene=g6266 Length=475
MYFSFSQFLQILESQKLDITDSIFLVRESSTLVNNYVVSVIYRNEFFHYQIQRHGDDSFF
SIDSQFIHHGLDDLIEYYKHNESNLCTKLGKFVKKGPPPLKYCKLGKANLLHRATKHNNL
NVVKEILSTSYRNLDAKNENGMTAVRLAAINKISAEIMKLLIENGSALASRDSVGNTPLH
YACKFECKEMVELLIDASKTLIYARNTFTHEVPLHEAAKVGNLEIVKILLQNNAASMPRA
NNGKLPINYAREKGHYDVVEYLEKYVPVCNTFSHKWHHGTLDREGARTLLLKKRNELYEK
YREEYALEENVYVNDNKEINDLICGLFLVRTSERNGGLDVITMLHDDDDLKNIRNYVIHK
SDNLKYFYIDDGPFFTSLEHLISYYMTHADGLPAKLTQFVSPIVRPPIPTLTLQKKSKSM
VQSPAASTNSVSSPESANNSITMESQTKAKSSVFTLFKKKKHSLPTSLSKEDKPS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g6266.t2 Gene3D G3DSA:3.30.505.10 SHC Adaptor Protein 6 102 5.0E-16
14 g6266.t2 Gene3D G3DSA:1.25.40.20 - 103 263 6.4E-34
16 g6266.t2 Gene3D G3DSA:3.30.505.10 SHC Adaptor Protein 264 401 1.4E-22
24 g6266.t2 MobiDBLite mobidb-lite consensus disorder prediction 414 446 -
5 g6266.t2 PANTHER PTHR24418 TYROSINE-PROTEIN KINASE 24 460 1.3E-40
6 g6266.t2 PANTHER PTHR24418:SF372 TYROSINE-PROTEIN KINASE SHARK 24 460 1.3E-40
9 g6266.t2 PRINTS PR00401 SH2 domain signature 276 290 4.4E-7
10 g6266.t2 PRINTS PR00401 SH2 domain signature 324 334 4.4E-7
8 g6266.t2 PRINTS PR00401 SH2 domain signature 352 362 4.4E-7
7 g6266.t2 PRINTS PR00401 SH2 domain signature 374 388 4.4E-7
2 g6266.t2 Pfam PF00017 SH2 domain 21 78 1.0E-8
4 g6266.t2 Pfam PF12796 Ankyrin repeats (3 copies) 111 197 1.9E-13
3 g6266.t2 Pfam PF12796 Ankyrin repeats (3 copies) 210 262 5.2E-8
1 g6266.t2 Pfam PF00017 SH2 domain 325 385 8.1E-8
29 g6266.t2 ProSiteProfiles PS50001 Src homology 2 (SH2) domain profile. 1 93 12.51
25 g6266.t2 ProSiteProfiles PS50297 Ankyrin repeat region circular profile. 106 262 33.129
27 g6266.t2 ProSiteProfiles PS50088 Ankyrin repeat profile. 140 173 9.137
26 g6266.t2 ProSiteProfiles PS50088 Ankyrin repeat profile. 174 206 8.656
28 g6266.t2 ProSiteProfiles PS50088 Ankyrin repeat profile. 209 234 9.805
30 g6266.t2 ProSiteProfiles PS50001 Src homology 2 (SH2) domain profile. 276 403 16.93
23 g6266.t2 SMART SM00252 SH2_5 2 84 8.6E-4
19 g6266.t2 SMART SM00248 ANK_2a 106 136 9.9
17 g6266.t2 SMART SM00248 ANK_2a 140 170 5.6
20 g6266.t2 SMART SM00248 ANK_2a 174 204 0.014
21 g6266.t2 SMART SM00248 ANK_2a 209 239 0.06
18 g6266.t2 SMART SM00248 ANK_2a 242 271 57.0
22 g6266.t2 SMART SM00252 SH2_5 274 391 6.6E-13
13 g6266.t2 SUPERFAMILY SSF55550 SH2 domain 19 95 1.75E-16
11 g6266.t2 SUPERFAMILY SSF48403 Ankyrin repeat 106 264 3.2E-33
12 g6266.t2 SUPERFAMILY SSF55550 SH2 domain 268 401 8.12E-18

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values