Gene loci information

Transcript annotation

  • This transcript has been annotated as NADH-cytochrome b5 reductase 3 .

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6286 g6286.t1 TSS g6286.t1 15836782 15836782
chr_2 g6286 g6286.t1 isoform g6286.t1 15837104 15839749
chr_2 g6286 g6286.t1 exon g6286.t1.exon1 15837104 15837118
chr_2 g6286 g6286.t1 cds g6286.t1.CDS1 15837104 15837118
chr_2 g6286 g6286.t1 exon g6286.t1.exon2 15838419 15838546
chr_2 g6286 g6286.t1 cds g6286.t1.CDS2 15838419 15838546
chr_2 g6286 g6286.t1 exon g6286.t1.exon3 15838918 15839749
chr_2 g6286 g6286.t1 cds g6286.t1.CDS3 15838918 15839749
chr_2 g6286 g6286.t1 TTS g6286.t1 15840080 15840080

Sequences

>g6286.t1 Gene=g6286 Length=975
ATGAATCCGAAATACGCATTTCCATTCATCACCGGTGCTATTACAATTTTAGTGACTGTC
TTGCTGTATAAAGTATTTAAAGCAAAGCAATTACACAAAGACGATGAAGAGGAGGAAGAT
GAACAACAGGATCAAGTAGCGAGTGAGAAGCCTGTTGGACCGCTGAAGACACTCGTCGAA
CCGAATGAGAAATATTTTTTGCCTTTAGTTGAAAAAGAAGAAATTAATCATGATACAAGA
AAATTCCGTTTTGCATTGCCCAGTCCTGATCACGTATTAGGATTACCTGTCGGTCAACAC
GTTCACTTATCTGTGTCAATAAATAATGAACTCGTTATCAGATCGTATACGCCCGTTTCG
AGCGATGATGATAAGGGCTTTGTTGACTTAGTTATTAAAGTATATAGAAGAAATATTCAT
CCAAAGTTCCCTGATGGTGGAAAAATGTCTCAATATCTTGATGAAATGAAAATTGGCGAT
ACAATTGCATTTAGAGGACCATCTGGGAAATTGCAATATCTTGGCAAAGGGAAATTTGCA
ATTAAAAAACTTCGTAAGGATCCACCACAAATTATAAATGTACAGAAAGTTAATATGATT
GCTGGTGGAAGTGGAATTACACCAATGCTTCAACTTATCAATGAAATGCTTAAAAAGTCT
GACGATAACACACAAATTGCTCTTCTTTATGCCAATCAAACAGAGGACGATATTTTGTTG
CGCGATGATATTGATGTATTGGCTGCAAAACATCAAGAACAATTTAAAGTTTGGTATACA
GTAGACCGTGCATTAACACCTAATTGGAAATATAGCACTGGTTTTGTTAATGATACCATG
ATTCAAGAAAACCTCTTTCCTCCATCATCCGATTGTTTGACAGTCATGTGTGGACCGCCG
CCAATGATCAATTTTGCTTGCCTGCCTAATCTTGACAAACTTGGTTACGATAAGGAATTG
AACTTTGCTTACTAA

>g6286.t1 Gene=g6286 Length=324
MNPKYAFPFITGAITILVTVLLYKVFKAKQLHKDDEEEEDEQQDQVASEKPVGPLKTLVE
PNEKYFLPLVEKEEINHDTRKFRFALPSPDHVLGLPVGQHVHLSVSINNELVIRSYTPVS
SDDDKGFVDLVIKVYRRNIHPKFPDGGKMSQYLDEMKIGDTIAFRGPSGKLQYLGKGKFA
IKKLRKDPPQIINVQKVNMIAGGSGITPMLQLINEMLKKSDDNTQIALLYANQTEDDILL
RDDIDVLAAKHQEQFKVWYTVDRALTPNWKYSTGFVNDTMIQENLFPPSSDCLTVMCGPP
PMINFACLPNLDKLGYDKELNFAY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
22 g6286.t1 CDD cd06183 cyt_b5_reduct_like 67 324 3.28416E-103
18 g6286.t1 Gene3D G3DSA:2.40.30.10 Translation factors 55 167 1.2E-42
17 g6286.t1 Gene3D G3DSA:3.40.50.80 - 169 324 1.3E-45
24 g6286.t1 MobiDBLite mobidb-lite consensus disorder prediction 34 53 -
3 g6286.t1 PANTHER PTHR19370 NADH-CYTOCHROME B5 REDUCTASE 56 324 5.9E-120
4 g6286.t1 PANTHER PTHR19370:SF108 NADH-CYTOCHROME B5 REDUCTASE 2 56 324 5.9E-120
12 g6286.t1 PRINTS PR00406 Cytochrome B5 reductase signature 93 104 3.2E-29
8 g6286.t1 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 114 121 7.0E-7
14 g6286.t1 PRINTS PR00406 Cytochrome B5 reductase signature 114 121 3.2E-29
13 g6286.t1 PRINTS PR00406 Cytochrome B5 reductase signature 159 173 3.2E-29
6 g6286.t1 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 198 217 7.0E-7
10 g6286.t1 PRINTS PR00406 Cytochrome B5 reductase signature 198 217 3.2E-29
5 g6286.t1 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 236 247 7.0E-7
9 g6286.t1 PRINTS PR00406 Cytochrome B5 reductase signature 236 247 3.2E-29
7 g6286.t1 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 293 301 7.0E-7
11 g6286.t1 PRINTS PR00406 Cytochrome B5 reductase signature 293 301 3.2E-29
1 g6286.t1 Pfam PF00970 Oxidoreductase FAD-binding domain 68 173 9.5E-38
2 g6286.t1 Pfam PF00175 Oxidoreductase NAD-binding domain 199 307 2.4E-29
20 g6286.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 5 -
21 g6286.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 6 26 -
19 g6286.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 27 324 -
25 g6286.t1 ProSiteProfiles PS51384 Ferredoxin reductase-type FAD binding domain profile. 62 174 16.482
15 g6286.t1 SUPERFAMILY SSF63380 Riboflavin synthase domain-like 57 175 4.12E-39
16 g6286.t1 SUPERFAMILY SSF52343 Ferredoxin reductase-like, C-terminal NADP-linked domain 160 319 3.54E-35
23 g6286.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 5 23 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055114 NA NA
GO:0016491 oxidoreductase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values