Gene loci information

Transcript annotation

  • This transcript has been annotated as Enolase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6296 g6296.t11 TTS g6296.t11 16017865 16017865
chr_2 g6296 g6296.t11 isoform g6296.t11 16018227 16020627
chr_2 g6296 g6296.t11 exon g6296.t11.exon1 16018227 16019510
chr_2 g6296 g6296.t11 cds g6296.t11.CDS1 16018306 16019442
chr_2 g6296 g6296.t11 exon g6296.t11.exon2 16020562 16020627
chr_2 g6296 g6296.t11 TSS g6296.t11 16020625 16020625

Sequences

>g6296.t11 Gene=g6296 Length=1350
ATTTTCAAGCTGAATCGCGTTGAGAAAGTTCACTTGTAGCCGATTTCCTGAAAATTAATT
GAAAAATTCCATCAGGAGCTTCGACTGGCATCCATGAAGCACTTGAATTACGTGACAAGG
AAGCTGCTAACTGGATGGGAAAGGGTGTTTTGAAAGCCGTTGCTCATGTCAATGACTCAC
TCGGCCCAGAAGTTATCAAATCAGGCTTGGAAGTAACTCAACAACGCGAAATCGATGAAT
TGATGATCAAACTTGATGGCACACCAAACAAATCAAAGTTCGGTGCTAATGCTATTTTGG
GTGTCTCATTGGCTGTCTGCAAAGCTGGTGCAGCAAAGAAAGGTGTTCCTCTTTATCAAC
ATATTGCTGACTTAGCTGGCAACAAGGATATCTGGCTTCCAGTTCCAGCTTTTAACGTCA
TTAACGGTGGTGAACATGCTGGTAACTTGTTAGCTATGCAAGAATTTATGCTCTTGCCAG
TTGGAGCTAAGTCATTCACTGAGGCAATGAAAATGGGAGCTGAAACATACCACAATTTGG
CTAAAGTTATTCAACAAAAGTTCGGAAAGGATGCCACAGCTGTCGGTGATGAAGGTGGTT
TTGCACCAAACATCCTTGATAATCGTGCTGGTTTGGAATTGATTGTTGAGGCTATTGAAA
AAGCTGGTTACACTGGCAAAATTAAGATCGGTATGGATGTTGCTGCTTCAGAATTCAAGG
ACGAAGATGGAACATATGACTTATTCAAGAAAGACAAGGTTAAGGATAAGTCACGCAACT
TATCATCAGATAAATTGGGTGATCTCTATATGGAATTCATCAAGGATTTCCCAGTTGTAA
GTATTGAGGACCCATTTGATCAAGACGATTGGGAAGCATGGACTAAACTTAATGCTCGTG
CTGGAATTCAAATTGTCGGTGATGATTTGACTGTCACTAATCCAAAACGTATTCAAACCG
CTGTCGAAAAGAAGGCTTGCAACTGCTTGTTACTCAAAGTCAACCAAATCGGCTCAGTCA
CAGAGTCAATTGATGCTCATTTGTTAGCAAAGAAAAATGGCTGGGGTACAATGGTCTCAC
ATCGTTCAGGCGAAACTGAAGACTCATTCATTGCTGACTTGGTTGTTGGTCTTTCAACTG
GTCAAATTAAGACTGGTGCACCATGCCGTTCTGAGAGATTGTGCAAATACAATCAAATCT
TACGTATTGAGGAAGAACTCGGAGCTAATGCCAAGTTTGCTGGCGAGAAATTCAGAAATC
CACACGCCTAAATTTTCAGCTGAATTTATTTCTCTTATTCTAATTTAATGCAACACAAAA
CATACAAAAATAAAGTTAATTGATAAAAAC

>g6296.t11 Gene=g6296 Length=378
MGKGVLKAVAHVNDSLGPEVIKSGLEVTQQREIDELMIKLDGTPNKSKFGANAILGVSLA
VCKAGAAKKGVPLYQHIADLAGNKDIWLPVPAFNVINGGEHAGNLLAMQEFMLLPVGAKS
FTEAMKMGAETYHNLAKVIQQKFGKDATAVGDEGGFAPNILDNRAGLELIVEAIEKAGYT
GKIKIGMDVAASEFKDEDGTYDLFKKDKVKDKSRNLSSDKLGDLYMEFIKDFPVVSIEDP
FDQDDWEAWTKLNARAGIQIVGDDLTVTNPKRIQTAVEKKACNCLLLKVNQIGSVTESID
AHLLAKKNGWGTMVSHRSGETEDSFIADLVVGLSTGQIKTGAPCRSERLCKYNQILRIEE
ELGANAKFAGEKFRNPHA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g6296.t11 CDD cd03313 enolase 1 361 0.0
13 g6296.t11 Gene3D G3DSA:3.30.390.10 - 1 70 1.3E-28
12 g6296.t11 Gene3D G3DSA:3.20.20.120 Enolase superfamily 71 378 1.2E-143
4 g6296.t11 Hamap MF_00318 Enolase [eno]. 1 362 32.905132
3 g6296.t11 PANTHER PTHR11902 ENOLASE 1 375 2.7E-197
8 g6296.t11 PRINTS PR00148 Enolase signature 50 66 7.4E-44
9 g6296.t11 PRINTS PR00148 Enolase signature 107 120 7.4E-44
7 g6296.t11 PRINTS PR00148 Enolase signature 262 273 7.4E-44
6 g6296.t11 PRINTS PR00148 Enolase signature 285 299 7.4E-44
5 g6296.t11 PRINTS PR00148 Enolase signature 314 331 7.4E-44
1 g6296.t11 Pfam PF03952 Enolase, N-terminal domain 1 77 1.5E-28
2 g6296.t11 Pfam PF00113 Enolase, C-terminal TIM barrel domain 87 375 6.3E-147
17 g6296.t11 ProSitePatterns PS00164 Enolase signature. 285 298 -
19 g6296.t11 SFLD SFLDG00178 enolase 2 362 0.0
20 g6296.t11 SFLD SFLDS00001 Enolase 2 362 0.0
15 g6296.t11 SMART SM01193 Enolase_N_3 1 77 4.7E-23
16 g6296.t11 SMART SM01192 Enolase_C_3 85 376 3.6E-192
10 g6296.t11 SUPERFAMILY SSF54826 Enolase N-terminal domain-like 1 83 3.31E-29
11 g6296.t11 SUPERFAMILY SSF51604 Enolase C-terminal domain-like 86 375 1.36E-125
18 g6296.t11 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 1 373 2.0E-139

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0000287 magnesium ion binding MF
GO:0004634 phosphopyruvate hydratase activity MF
GO:0006096 glycolytic process BP
GO:0000015 phosphopyruvate hydratase complex CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values