Gene loci information

Transcript annotation

  • This transcript has been annotated as Enolase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6296 g6296.t9 isoform g6296.t9 16018227 16020627
chr_2 g6296 g6296.t9 TTS g6296.t9 16018227 16018227
chr_2 g6296 g6296.t9 exon g6296.t9.exon1 16018227 16018577
chr_2 g6296 g6296.t9 cds g6296.t9.CDS1 16018306 16018577
chr_2 g6296 g6296.t9 exon g6296.t9.exon2 16018629 16019620
chr_2 g6296 g6296.t9 cds g6296.t9.CDS2 16018629 16019613
chr_2 g6296 g6296.t9 exon g6296.t9.exon3 16020562 16020627
chr_2 g6296 g6296.t9 TSS g6296.t9 16020625 16020625

Sequences

>g6296.t9 Gene=g6296 Length=1409
ATTTTCAAGCTGAATCGCGTTGAGAAAGTTCACTTGTAGCCGATTTCCTGAAAATTAATT
GAAAAACTCAAAAATGCCAATCAAAAGCATCAAAGCACGTCAAATTTTTGACTCTCGCGG
TAACCCAACCGTTGAAGTTGATCTCACAACTGAATTGGGAATGTTCCGTGCTGCAGTTCC
ATCAGGAGCTTCGACTGGCATCCATGAAGCACTTGAATTACGTGACAAGGAAGCTGCTAA
CTGGATGGGAAAGGGTGTTTTGAAAGCCGTTGCTCATGTCAATGACTCACTCGGCCCAGA
AGTTATCAAATCAGGCTTGGAAGTAACTCAACAACGCGAAATCGATGAATTGATGATCAA
ACTTGATGGCACACCAAACAAATCAAAGTTCGGTGCTAATGCTATTTTGGGTGTCTCATT
GGCTGTCTGCAAAGCTGGTGCAGCAAAGAAAGGTGTTCCTCTTTATCAACATATTGCTGA
CTTAGCTGGCAACAAGGATATCTGGCTTCCAGTTCCAGCTTTTAACGTCATTAACGGTGG
TGAACATGCTGGTAACTTGTTAGCTATGCAAGAATTTATGCTCTTGCCAGTTGGAGCTAA
GTCATTCACTGAGGCAATGAAAATGGGAGCTGAAACATACCACAATTTGGCTAAAGTTAT
TCAACAAAAGTTCGGAAAGGATGCCACAGCTGTCGGTGATGAAGGTGGTTTTGCACCAAA
CATCCTTGATAATCGTGCTGGTTTGGAATTGATTGTTGAGGCTATTGAAAAAGCTGGTTA
CACTGGCAAAATTAAGATCGGTATGGATGTTGCTGCTTCAGAATTCAAGGACGAAGATGG
AACATATGACTTATTCAAGAAAGACAAGGTTAAGGATAAGTCACGCAACTTATCATCAGA
TAAATTGGGTGATCTCTATATGGAATTCATCAAGGATTTCCCAGTTGTAAGTATTGAGGA
CCCATTTGATCAAGACGATTGGGAAGCATGGACTAAACTTAATGCTCGTGCTGGAATTCA
AATTGTCGGTGATGATTTGACTGTCACTAATCCAAAACTCAACCAAATCGGCTCAGTCAC
AGAGTCAATTGATGCTCATTTGTTAGCAAAGAAAAATGGCTGGGGTACAATGGTCTCACA
TCGTTCAGGCGAAACTGAAGACTCATTCATTGCTGACTTGGTTGTTGGTCTTTCAACTGG
TCAAATTAAGACTGGTGCACCATGCCGTTCTGAGAGATTGTGCAAATACAATCAAATCTT
ACGTATTGAGGAAGAACTCGGAGCTAATGCCAAGTTTGCTGGCGAGAAATTCAGAAATCC
ACACGCCTAAATTTTCAGCTGAATTTATTTCTCTTATTCTAATTTAATGCAACACAAAAC
ATACAAAAATAAAGTTAATTGATAAAAAC

>g6296.t9 Gene=g6296 Length=418
MPIKSIKARQIFDSRGNPTVEVDLTTELGMFRAAVPSGASTGIHEALELRDKEAANWMGK
GVLKAVAHVNDSLGPEVIKSGLEVTQQREIDELMIKLDGTPNKSKFGANAILGVSLAVCK
AGAAKKGVPLYQHIADLAGNKDIWLPVPAFNVINGGEHAGNLLAMQEFMLLPVGAKSFTE
AMKMGAETYHNLAKVIQQKFGKDATAVGDEGGFAPNILDNRAGLELIVEAIEKAGYTGKI
KIGMDVAASEFKDEDGTYDLFKKDKVKDKSRNLSSDKLGDLYMEFIKDFPVVSIEDPFDQ
DDWEAWTKLNARAGIQIVGDDLTVTNPKLNQIGSVTESIDAHLLAKKNGWGTMVSHRSGE
TEDSFIADLVVGLSTGQIKTGAPCRSERLCKYNQILRIEEELGANAKFAGEKFRNPHA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g6296.t9 CDD cd03313 enolase 5 401 0.00000
13 g6296.t9 Gene3D G3DSA:3.30.390.10 - 1 127 0.00000
12 g6296.t9 Gene3D G3DSA:3.20.20.120 Enolase superfamily 128 418 0.00000
4 g6296.t9 Hamap MF_00318 Enolase [eno]. 1 402 39.19498
3 g6296.t9 PANTHER PTHR11902 ENOLASE 1 415 0.00000
14 g6296.t9 PIRSF PIRSF001400 Enolase 1 415 0.00000
6 g6296.t9 PRINTS PR00148 Enolase signature 35 49 0.00000
8 g6296.t9 PRINTS PR00148 Enolase signature 107 123 0.00000
9 g6296.t9 PRINTS PR00148 Enolase signature 164 177 0.00000
7 g6296.t9 PRINTS PR00148 Enolase signature 325 339 0.00000
5 g6296.t9 PRINTS PR00148 Enolase signature 354 371 0.00000
1 g6296.t9 Pfam PF03952 Enolase, N-terminal domain 3 134 0.00000
2 g6296.t9 Pfam PF00113 Enolase, C-terminal TIM barrel domain 144 328 0.00000
19 g6296.t9 SFLD SFLDG00178 enolase 3 402 0.00000
20 g6296.t9 SFLD SFLDF00002 enolase 3 402 0.00000
16 g6296.t9 SMART SM01193 Enolase_N_3 3 134 0.00000
17 g6296.t9 SMART SM01192 Enolase_C_3 142 416 0.00000
10 g6296.t9 SUPERFAMILY SSF54826 Enolase N-terminal domain-like 3 138 0.00000
11 g6296.t9 SUPERFAMILY SSF51604 Enolase C-terminal domain-like 143 415 0.00000
18 g6296.t9 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 3 413 0.00000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0000287 magnesium ion binding MF
GO:0004634 phosphopyruvate hydratase activity MF
GO:0006096 glycolytic process BP
GO:0000015 phosphopyruvate hydratase complex CC

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values