General information for g63.t13
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Cytochrome P450 6a9.
Parent gene
- The parent gene g63 is located on chr_3: 447236..450989 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g63 | g63.t13 | TTS | g63.t13 | 446108 | 446108 |
| chr_3 | g63 | g63.t13 | isoform | g63.t13 | 447004 | 447808 |
| chr_3 | g63 | g63.t13 | exon | g63.t13.exon1 | 447004 | 447107 |
| chr_3 | g63 | g63.t13 | cds | g63.t13.CDS1 | 447065 | 447107 |
| chr_3 | g63 | g63.t13 | exon | g63.t13.exon2 | 447192 | 447510 |
| chr_3 | g63 | g63.t13 | cds | g63.t13.CDS2 | 447192 | 447510 |
| chr_3 | g63 | g63.t13 | exon | g63.t13.exon3 | 447599 | 447808 |
| chr_3 | g63 | g63.t13 | cds | g63.t13.CDS3 | 447599 | 447779 |
| chr_3 | g63 | g63.t13 | TSS | g63.t13 | 448395 | 448395 |
Sequences
>g63.t13 Gene=g63 Length=633
GTGAGCAATGGAAAACATTACGACAAAAAATGACTACGACATTTTCGAGTGGCAAAATTA
AAGCTATGATGCCGACCTTAAATAAAATTTCTGAAGAAATGACGGAAGTACTTGGTGAAT
ATGCAGATGAAGGCAAAACTTTGAATTATAGAGACATGGCATCACGTCTTATGTGCGAAA
TTGTAGGAGAGATTGCATTTGGAATTAAATGTAATGCACTTCGTGATCCCAATTGTGAAA
TGATGGTATTAAGTGATTTTCTCAGTATTAAAGACATGAAACAAAGAGTTATGTATTTAT
TTTCAAACGCATTTCCTGAAGTATGTCGTAAATTAAATATTCAAATCACACCCAAAGATG
TACAACATTATTTTCTTAAAATTATCAACGAAGCAATTGAATATCGTGAAAAGAACAAAA
TACGTAGAAATGATTATTTTGACATGCTTCTTCAGTTGAAAAATGAAGGAAAACTTGATG
GTGATGTGACAAATGTTGGAAGAATTTCACACACAGACATGTTGGCAGCGCTTCGAAACT
TCATCAACTGCACTCGCTTATGCTCTCTATGAACTTGCAGTAAATCAAGAACTTCAAGAT
CGCACACGTGATGAAATTGAAAAAGTTTTAAGT
>g63.t13 Gene=g63 Length=180
MTTTFSSGKIKAMMPTLNKISEEMTEVLGEYADEGKTLNYRDMASRLMCEIVGEIAFGIK
CNALRDPNCEMMVLSDFLSIKDMKQRVMYLFSNAFPEVCRKLNIQITPKDVQHYFLKIIN
EAIEYREKNKIRRNDYFDMLLQLKNEGKLDGDVTNVGRISHTDMLAALRNFINCTRLCSL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g63.t13 | Gene3D | G3DSA:1.10.630.10 | Cytochrome p450 | 1 | 173 | 0 |
| 2 | g63.t13 | PANTHER | PTHR24292 | CYTOCHROME P450 | 1 | 149 | 0 |
| 3 | g63.t13 | PANTHER | PTHR24292:SF95 | CYP6A16, ISOFORM B-RELATED | 1 | 149 | 0 |
| 1 | g63.t13 | Pfam | PF00067 | Cytochrome P450 | 1 | 147 | 0 |
| 4 | g63.t13 | SUPERFAMILY | SSF48264 | Cytochrome P450 | 2 | 152 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0020037 | heme binding | MF |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | MF |
| GO:0005506 | iron ion binding | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed