Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Probable cytochrome P450 6a14.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g63 g63.t2 isoform g63.t2 446101 447004
chr_3 g63 g63.t2 exon g63.t2.exon1 446101 446635
chr_3 g63 g63.t2 TTS g63.t2 446108 446108
chr_3 g63 g63.t2 cds g63.t2.CDS1 446462 446635
chr_3 g63 g63.t2 exon g63.t2.exon2 446695 447004
chr_3 g63 g63.t2 cds g63.t2.CDS2 446695 446970
chr_3 g63 g63.t2 TSS g63.t2 NA NA

Sequences

>g63.t2 Gene=g63 Length=845
TAATTATGATGGAAAAGTGACATATGAAGCTCTCATGAATATGAATTATCCTGGTCAAGT
TATTAGTGAATCACTTCGTAAATACACACCAGGAAATGTTTTGATGAGAAAATGTACAAA
AGAATATAAAATTCCTGACACTGATATTGTAATTGAGAAAGGTCGAATGGTCTTTTTACC
AATGCATGCCATTCATAATGATCCTGAGTACTTCCCTGATCCTGAAAAATTTGATCCTGA
TAGATTTTCTCCTGAAATGGAAAAAGAACGAAATCCATTTACATTTTTACCATTTGGTGA
AGGAATGAGAATCTGCATGGGTCTACGTTTCGGTCTAATTCAAACACGTCTTGGCCTTGT
TTCGGTTTTACGTAAATACCGTGTAACACTCAATGAGAAAACAGTTCATCCTATTCGTCT
TGATCCAAAAGATGTCACAATGATGCCTTACGGTGGTATTTGGCTCAACACAGAACACAT
CTGAAATGGTTGTGTCAATTTTTATCTCTTTTCTTCTTGAGCTTCAATATTTATACTGTG
TGGGTTATTTACATTAGAAATTGTTGACCATTATCAAGAAGAAAAACCAAAAAAAGCCTT
TCTAGCAAAAAAAAATCATTACGAAACATTTTTATTTCTTTACTTTGTAACTTATTTTTT
TATGTATGACAAGAAGAAGGGAGTAAGAAAATGTCAATTATTAAAATTGAATCAACTATA
AATGAAAATAGAAATTGAGTAAACAATTAGTGAAATTAATTAAATGTATTCTTTTAAATT
CAAAAACTTATATTAATATTGAAAAATTTTAATAAATTTGATAATTTAACATAAAATGAA
AAATT

>g63.t2 Gene=g63 Length=149
MNMNYPGQVISESLRKYTPGNVLMRKCTKEYKIPDTDIVIEKGRMVFLPMHAIHNDPEYF
PDPEKFDPDRFSPEMEKERNPFTFLPFGEGMRICMGLRFGLIQTRLGLVSVLRKYRVTLN
EKTVHPIRLDPKDVTMMPYGGIWLNTEHI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g63.t2 Gene3D G3DSA:1.10.630.10 Cytochrome p450 1 149 1.1E-43
2 g63.t2 PANTHER PTHR24292 CYTOCHROME P450 1 148 1.6E-58
3 g63.t2 PANTHER PTHR24292:SF95 CYP6A16, ISOFORM B-RELATED 1 148 1.6E-58
6 g63.t2 PRINTS PR00465 E-class P450 group IV signature 3 19 4.6E-14
5 g63.t2 PRINTS PR00465 E-class P450 group IV signature 54 72 4.6E-14
4 g63.t2 PRINTS PR00465 E-class P450 group IV signature 78 94 4.6E-14
7 g63.t2 PRINTS PR00465 E-class P450 group IV signature 94 112 4.6E-14
1 g63.t2 Pfam PF00067 Cytochrome P450 1 142 8.0E-42
9 g63.t2 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 87 96 -
8 g63.t2 SUPERFAMILY SSF48264 Cytochrome P450 2 145 1.96E-43

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0004497 monooxygenase activity MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed