Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable cytochrome P450 6a14.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g63 g63.t3 isoform g63.t3 446101 447236
chr_3 g63 g63.t3 exon g63.t3.exon1 446101 446635
chr_3 g63 g63.t3 TTS g63.t3 446108 446108
chr_3 g63 g63.t3 cds g63.t3.CDS1 446462 446635
chr_3 g63 g63.t3 exon g63.t3.exon2 446695 447107
chr_3 g63 g63.t3 cds g63.t3.CDS2 446695 447107
chr_3 g63 g63.t3 exon g63.t3.exon3 447169 447236
chr_3 g63 g63.t3 cds g63.t3.CDS3 447169 447202
chr_3 g63 g63.t3 TSS g63.t3 NA NA

Sequences

>g63.t3 Gene=g63 Length=1016
TGTGACAAATGTTGGAAGAATTTCACACACAGACATGTTGGCAGCATGCTTTGTCTTTTT
TGTAGCTGGCTTCGAAACTTCATCAACTGCACTCGCTTATGCTCTCTATGAACTTGCAGT
AAATCAAGAACTTCAAGATCGCACACGTGATGAAATTGAAAAAGTTTTAAGTAATTATGA
TGGAAAAGTGACATATGAAGCTCTCATGAATATGAATTATCCTGGTCAAGTTATTAGTGA
ATCACTTCGTAAATACACACCAGGAAATGTTTTGATGAGAAAATGTACAAAAGAATATAA
AATTCCTGACACTGATATTGTAATTGAGAAAGGTCGAATGGTCTTTTTACCAATGCATGC
CATTCATAATGATCCTGAGTACTTCCCTGATCCTGAAAAATTTGATCCTGATAGATTTTC
TCCTGAAATGGAAAAAGAACGAAATCCATTTACATTTTTACCATTTGGTGAAGGAATGAG
AATCTGCATGGGTCTACGTTTCGGTCTAATTCAAACACGTCTTGGCCTTGTTTCGGTTTT
ACGTAAATACCGTGTAACACTCAATGAGAAAACAGTTCATCCTATTCGTCTTGATCCAAA
AGATGTCACAATGATGCCTTACGGTGGTATTTGGCTCAACACAGAACACATCTGAAATGG
TTGTGTCAATTTTTATCTCTTTTCTTCTTGAGCTTCAATATTTATACTGTGTGGGTTATT
TACATTAGAAATTGTTGACCATTATCAAGAAGAAAAACCAAAAAAAGCCTTTCTAGCAAA
AAAAAATCATTACGAAACATTTTTATTTCTTTACTTTGTAACTTATTTTTTTATGTATGA
CAAGAAGAAGGGAGTAAGAAAATGTCAATTATTAAAATTGAATCAACTATAAATGAAAAT
AGAAATTGAGTAAACAATTAGTGAAATTAATTAAATGTATTCTTTTAAATTCAAAAACTT
ATATTAATATTGAAAAATTTTAATAAATTTGATAATTTAACATAAAATGAAAAATT

>g63.t3 Gene=g63 Length=206
MLAACFVFFVAGFETSSTALAYALYELAVNQELQDRTRDEIEKVLSNYDGKVTYEALMNM
NYPGQVISESLRKYTPGNVLMRKCTKEYKIPDTDIVIEKGRMVFLPMHAIHNDPEYFPDP
EKFDPDRFSPEMEKERNPFTFLPFGEGMRICMGLRFGLIQTRLGLVSVLRKYRVTLNEKT
VHPIRLDPKDVTMMPYGGIWLNTEHI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g63.t3 Gene3D G3DSA:1.10.630.10 Cytochrome p450 1 204 3.1E-67
2 g63.t3 PANTHER PTHR24292 CYTOCHROME P450 2 205 1.5E-88
3 g63.t3 PANTHER PTHR24292:SF95 CYP6A16, ISOFORM B-RELATED 2 205 1.5E-88
10 g63.t3 PRINTS PR00385 P450 superfamily signature 11 28 5.9E-11
4 g63.t3 PRINTS PR00463 E-class P450 group I signature 20 46 7.5E-16
11 g63.t3 PRINTS PR00385 P450 superfamily signature 65 76 5.9E-11
5 g63.t3 PRINTS PR00463 E-class P450 group I signature 106 130 7.5E-16
6 g63.t3 PRINTS PR00463 E-class P450 group I signature 141 151 7.5E-16
9 g63.t3 PRINTS PR00385 P450 superfamily signature 142 151 5.9E-11
7 g63.t3 PRINTS PR00463 E-class P450 group I signature 151 174 7.5E-16
8 g63.t3 PRINTS PR00385 P450 superfamily signature 151 162 5.9E-11
1 g63.t3 Pfam PF00067 Cytochrome P450 3 199 1.7E-61
16 g63.t3 Phobius SIGNAL_PEPTIDE Signal peptide region 1 21 -
17 g63.t3 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 1 -
18 g63.t3 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 2 13 -
19 g63.t3 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 14 21 -
15 g63.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 22 206 -
20 g63.t3 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 144 153 -
12 g63.t3 SUPERFAMILY SSF48264 Cytochrome P450 2 202 1.19E-64
13 g63.t3 SignalP_EUK SignalP-noTM SignalP-noTM 1 21 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed