Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytochrome P450 6A1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g63 g63.t5 isoform g63.t5 446101 448301
chr_3 g63 g63.t5 exon g63.t5.exon1 446101 446635
chr_3 g63 g63.t5 TTS g63.t5 446108 446108
chr_3 g63 g63.t5 cds g63.t5.CDS1 446462 446635
chr_3 g63 g63.t5 exon g63.t5.exon2 446695 447107
chr_3 g63 g63.t5 cds g63.t5.CDS2 446695 447107
chr_3 g63 g63.t5 exon g63.t5.exon3 447169 447510
chr_3 g63 g63.t5 cds g63.t5.CDS3 447169 447510
chr_3 g63 g63.t5 exon g63.t5.exon4 447599 447811
chr_3 g63 g63.t5 cds g63.t5.CDS4 447599 447779
chr_3 g63 g63.t5 exon g63.t5.exon5 447939 448301
chr_3 g63 g63.t5 TSS g63.t5 448395 448395

Sequences

>g63.t5 Gene=g63 Length=1866
ATGGCGTCGTCATTAGTTCTCATAAGCATTAGTCTCTTATTTTTATATCTTTTTAATTTA
GTTAAAAAACAATACAATTATTTTAAAGATCGTGGAATACCAAACCCAAAGCCAATTTTC
CCATTAGGCAATTTTTGGGGTGTTGGATTATCTGTGCATTTTATTCATCGTGTAAATGAA
ATTTATAGACAATTTAAAGGCAAAGCAAAAATTTGTGGATTTTTTGTCACTACAATACCA
GCATATATCGCACTTGATATTGAATTGATCAAGAATATTCTAGTGAAAGATTTTGACTCA
TTTCATGATCGTGGAATCTATTATAATGAAAAAGCCGATCCCTTATCAGCGCATATCTTT
TCGCGGGTGAGCAATGGAAAACATTACGACAAAAAATGACTACGACATTTTCGAGTGGCA
AAATTAAAGCTATGATGCCGACCTTAAATAAAATTTCTGAAGAAATGACGGAAGTACTTG
GTGAATATGCAGATGAAGGCAAAACTTTGAATTATAGAGACATGGCATCACGTCTTATGT
GCGAAATTGTAGGAGAGATTGCATTTGGAATTAAATGTAATGCACTTCGTGATCCCAATT
GTGAAATGATGGTATTAAGTGATTTTCTCAGTATTAAAGACATGAAACAAAGAGTTATGT
ATTTATTTTCAAACGCATTTCCTGAAGTATGTCGTAAATTAAATATTCAAATCACACCCA
AAGATGTACAACATTATTTTCTTAAAATTATCAACGAAGCAATTGAATATCGTGAAAAGA
ACAAAATACGTAGAAATGATTATTTTGACATGCTTCTTCAGTTGAAAAATGAAGGAAAAC
TTGATGGTGATGTGACAAATGTTGGAAGAATTTCACACACAGACATGTTGGCAGCATGCT
TTGTCTTTTTTGTAGCTGGCTTCGAAACTTCATCAACTGCACTCGCTTATGCTCTCTATG
AACTTGCAGTAAATCAAGAACTTCAAGATCGCACACGTGATGAAATTGAAAAAGTTTTAA
GTAATTATGATGGAAAAGTGACATATGAAGCTCTCATGAATATGAATTATCCTGGTCAAG
TTATTAGTGAATCACTTCGTAAATACACACCAGGAAATGTTTTGATGAGAAAATGTACAA
AAGAATATAAAATTCCTGACACTGATATTGTAATTGAGAAAGGTCGAATGGTCTTTTTAC
CAATGCATGCCATTCATAATGATCCTGAGTACTTCCCTGATCCTGAAAAATTTGATCCTG
ATAGATTTTCTCCTGAAATGGAAAAAGAACGAAATCCATTTACATTTTTACCATTTGGTG
AAGGAATGAGAATCTGCATGGGTCTACGTTTCGGTCTAATTCAAACACGTCTTGGCCTTG
TTTCGGTTTTACGTAAATACCGTGTAACACTCAATGAGAAAACAGTTCATCCTATTCGTC
TTGATCCAAAAGATGTCACAATGATGCCTTACGGTGGTATTTGGCTCAACACAGAACACA
TCTGAAATGGTTGTGTCAATTTTTATCTCTTTTCTTCTTGAGCTTCAATATTTATACTGT
GTGGGTTATTTACATTAGAAATTGTTGACCATTATCAAGAAGAAAAACCAAAAAAAGCCT
TTCTAGCAAAAAAAAATCATTACGAAACATTTTTATTTCTTTACTTTGTAACTTATTTTT
TTATGTATGACAAGAAGAAGGGAGTAAGAAAATGTCAATTATTAAAATTGAATCAACTAT
AAATGAAAATAGAAATTGAGTAAACAATTAGTGAAATTAATTAAATGTATTCTTTTAAAT
TCAAAAACTTATATTAATATTGAAAAATTTTAATAAATTTGATAATTTAACATAAAATGA
AAAATT

>g63.t5 Gene=g63 Length=369
MTTTFSSGKIKAMMPTLNKISEEMTEVLGEYADEGKTLNYRDMASRLMCEIVGEIAFGIK
CNALRDPNCEMMVLSDFLSIKDMKQRVMYLFSNAFPEVCRKLNIQITPKDVQHYFLKIIN
EAIEYREKNKIRRNDYFDMLLQLKNEGKLDGDVTNVGRISHTDMLAACFVFFVAGFETSS
TALAYALYELAVNQELQDRTRDEIEKVLSNYDGKVTYEALMNMNYPGQVISESLRKYTPG
NVLMRKCTKEYKIPDTDIVIEKGRMVFLPMHAIHNDPEYFPDPEKFDPDRFSPEMEKERN
PFTFLPFGEGMRICMGLRFGLIQTRLGLVSVLRKYRVTLNEKTVHPIRLDPKDVTMMPYG
GIWLNTEHI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g63.t5 Gene3D G3DSA:1.10.630.10 Cytochrome p450 1 369 6.5E-99
2 g63.t5 PANTHER PTHR24292 CYTOCHROME P450 1 368 3.5E-128
3 g63.t5 PANTHER PTHR24292:SF95 CYP6A16, ISOFORM B-RELATED 1 368 3.5E-128
7 g63.t5 PRINTS PR00463 E-class P450 group I signature 163 180 4.0E-19
12 g63.t5 PRINTS PR00385 P450 superfamily signature 174 191 3.8E-10
8 g63.t5 PRINTS PR00463 E-class P450 group I signature 183 209 4.0E-19
10 g63.t5 PRINTS PR00385 P450 superfamily signature 228 239 3.8E-10
4 g63.t5 PRINTS PR00463 E-class P450 group I signature 269 293 4.0E-19
6 g63.t5 PRINTS PR00463 E-class P450 group I signature 304 314 4.0E-19
11 g63.t5 PRINTS PR00385 P450 superfamily signature 305 314 3.8E-10
5 g63.t5 PRINTS PR00463 E-class P450 group I signature 314 337 4.0E-19
9 g63.t5 PRINTS PR00385 P450 superfamily signature 314 325 3.8E-10
1 g63.t5 Pfam PF00067 Cytochrome P450 1 362 5.8E-78
14 g63.t5 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 307 316 -
13 g63.t5 SUPERFAMILY SSF48264 Cytochrome P450 2 365 7.07E-86

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed