Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytochrome P450 6A1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g63 g63.t6 isoform g63.t6 446101 448301
chr_3 g63 g63.t6 exon g63.t6.exon1 446101 446635
chr_3 g63 g63.t6 TTS g63.t6 446108 446108
chr_3 g63 g63.t6 exon g63.t6.exon2 446695 446817
chr_3 g63 g63.t6 cds g63.t6.CDS1 446807 446817
chr_3 g63 g63.t6 exon g63.t6.exon3 446892 447107
chr_3 g63 g63.t6 cds g63.t6.CDS2 446892 447107
chr_3 g63 g63.t6 exon g63.t6.exon4 447169 447510
chr_3 g63 g63.t6 cds g63.t6.CDS3 447169 447510
chr_3 g63 g63.t6 exon g63.t6.exon5 447599 447815
chr_3 g63 g63.t6 cds g63.t6.CDS4 447599 447815
chr_3 g63 g63.t6 exon g63.t6.exon6 447939 448301
chr_3 g63 g63.t6 cds g63.t6.CDS5 447939 448301
chr_3 g63 g63.t6 TSS g63.t6 448395 448395

Sequences

>g63.t6 Gene=g63 Length=1796
ATGGCGTCGTCATTAGTTCTCATAAGCATTAGTCTCTTATTTTTATATCTTTTTAATTTA
GTTAAAAAACAATACAATTATTTTAAAGATCGTGGAATACCAAACCCAAAGCCAATTTTC
CCATTAGGCAATTTTTGGGGTGTTGGATTATCTGTGCATTTTATTCATCGTGTAAATGAA
ATTTATAGACAATTTAAAGGCAAAGCAAAAATTTGTGGATTTTTTGTCACTACAATACCA
GCATATATCGCACTTGATATTGAATTGATCAAGAATATTCTAGTGAAAGATTTTGACTCA
TTTCATGATCGTGGAATCTATTATAATGAAAAAGCCGATCCCTTATCAGCGCATATCTTT
TCGATAGCGGGTGAGCAATGGAAAACATTACGACAAAAAATGACTACGACATTTTCGAGT
GGCAAAATTAAAGCTATGATGCCGACCTTAAATAAAATTTCTGAAGAAATGACGGAAGTA
CTTGGTGAATATGCAGATGAAGGCAAAACTTTGAATTATAGAGACATGGCATCACGTCTT
ATGTGCGAAATTGTAGGAGAGATTGCATTTGGAATTAAATGTAATGCACTTCGTGATCCC
AATTGTGAAATGATGGTATTAAGTGATTTTCTCAGTATTAAAGACATGAAACAAAGAGTT
ATGTATTTATTTTCAAACGCATTTCCTGAAGTATGTCGTAAATTAAATATTCAAATCACA
CCCAAAGATGTACAACATTATTTTCTTAAAATTATCAACGAAGCAATTGAATATCGTGAA
AAGAACAAAATACGTAGAAATGATTATTTTGACATGCTTCTTCAGTTGAAAAATGAAGGA
AAACTTGATGGTGATGTGACAAATGTTGGAAGAATTTCACACACAGACATGTTGGCAGCA
TGCTTTGTCTTTTTTGTAGCTGGCTTCGAAACTTCATCAACTGCACTCGCTTATGCTCTC
TATGAACTTGCAGTAAATCAAGAACTTCAAGATCGCACACGTGATGAAATTGAAAAAGTT
TTAAGTAATTATGATGGAAAAGTGACATATGAAGCTCTCATGAATATGAATTATCCTGGT
CAAGTTATTAGTGAATCACTTCGTAAATACACACCAGGAAATGTTTTGATGAGAAAATGC
CATTCATAATGATCCTGAGTACTTCCCTGATCCTGAAAAATTTGATCCTGATAGATTTTC
TCCTGAAATGGAAAAAGAACGAAATCCATTTACATTTTTACCATTTGGTGAAGGAATGAG
AATCTGCATGGGTCTACGTTTCGGTCTAATTCAAACACGTCTTGGCCTTGTTTCGGTTTT
ACGTAAATACCGTGTAACACTCAATGAGAAAACAGTTCATCCTATTCGTCTTGATCCAAA
AGATGTCACAATGATGCCTTACGGTGGTATTTGGCTCAACACAGAACACATCTGAAATGG
TTGTGTCAATTTTTATCTCTTTTCTTCTTGAGCTTCAATATTTATACTGTGTGGGTTATT
TACATTAGAAATTGTTGACCATTATCAAGAAGAAAAACCAAAAAAAGCCTTTCTAGCAAA
AAAAAATCATTACGAAACATTTTTATTTCTTTACTTTGTAACTTATTTTTTTATGTATGA
CAAGAAGAAGGGAGTAAGAAAATGTCAATTATTAAAATTGAATCAACTATAAATGAAAAT
AGAAATTGAGTAAACAATTAGTGAAATTAATTAAATGTATTCTTTTAAATTCAAAAACTT
ATATTAATATTGAAAAATTTTAATAAATTTGATAATTTAACATAAAATGAAAAATT

>g63.t6 Gene=g63 Length=382
MASSLVLISISLLFLYLFNLVKKQYNYFKDRGIPNPKPIFPLGNFWGVGLSVHFIHRVNE
IYRQFKGKAKICGFFVTTIPAYIALDIELIKNILVKDFDSFHDRGIYYNEKADPLSAHIF
SIAGEQWKTLRQKMTTTFSSGKIKAMMPTLNKISEEMTEVLGEYADEGKTLNYRDMASRL
MCEIVGEIAFGIKCNALRDPNCEMMVLSDFLSIKDMKQRVMYLFSNAFPEVCRKLNIQIT
PKDVQHYFLKIINEAIEYREKNKIRRNDYFDMLLQLKNEGKLDGDVTNVGRISHTDMLAA
CFVFFVAGFETSSTALAYALYELAVNQELQDRTRDEIEKVLSNYDGKVTYEALMNMNYPG
QVISESLRKYTPGNVLMRKCHS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g63.t6 Gene3D G3DSA:1.10.630.10 Cytochrome p450 16 382 8.8E-82
2 g63.t6 PANTHER PTHR24292 CYTOCHROME P450 10 381 7.2E-117
3 g63.t6 PANTHER PTHR24292:SF95 CYP6A16, ISOFORM B-RELATED 10 381 7.2E-117
5 g63.t6 PRINTS PR00463 E-class P450 group I signature 89 110 1.3E-5
4 g63.t6 PRINTS PR00463 E-class P450 group I signature 296 313 1.3E-5
6 g63.t6 PRINTS PR00463 E-class P450 group I signature 316 342 1.3E-5
1 g63.t6 Pfam PF00067 Cytochrome P450 44 380 8.8E-51
11 g63.t6 Phobius SIGNAL_PEPTIDE Signal peptide region 1 23 -
12 g63.t6 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 4 -
13 g63.t6 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 5 18 -
14 g63.t6 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 19 23 -
10 g63.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 24 382 -
7 g63.t6 SUPERFAMILY SSF48264 Cytochrome P450 33 381 1.19E-65
8 g63.t6 SignalP_EUK SignalP-noTM SignalP-noTM 1 23 -
16 g63.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 4 21 -
15 g63.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 71 90 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed