Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytochrome P450 6A1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g63 g63.t9 TTS g63.t9 446108 446108
chr_3 g63 g63.t9 isoform g63.t9 446462 447501
chr_3 g63 g63.t9 exon g63.t9.exon1 446462 447107
chr_3 g63 g63.t9 cds g63.t9.CDS1 446659 447107
chr_3 g63 g63.t9 exon g63.t9.exon2 447169 447501
chr_3 g63 g63.t9 cds g63.t9.CDS2 447169 447481
chr_3 g63 g63.t9 TSS g63.t9 448395 448395

Sequences

>g63.t9 Gene=g63 Length=979
TTCGTGATCCCAATTGTGAAATGATGGTATTAAGTGATTTTCTCAGTATTAAAGACATGA
AACAAAGAGTTATGTATTTATTTTCAAACGCATTTCCTGAAGTATGTCGTAAATTAAATA
TTCAAATCACACCCAAAGATGTACAACATTATTTTCTTAAAATTATCAACGAAGCAATTG
AATATCGTGAAAAGAACAAAATACGTAGAAATGATTATTTTGACATGCTTCTTCAGTTGA
AAAATGAAGGAAAACTTGATGGTGATGTGACAAATGTTGGAAGAATTTCACACACAGACA
TGTTGGCAGCATGCTTTGTCTTTTTTGTAGCTGGCTTCGAAACTTCATCAACTGCACTCG
CTTATGCTCTCTATGAACTTGCAGTAAATCAAGAACTTCAAGATCGCACACGTGATGAAA
TTGAAAAAGTTTTAAGTAATTATGATGGAAAAGTGACATATGAAGCTCTCATGAATATGA
ATTATCCTGGTCAAGTTATTAGTGAATCACTTCGTAAATACACACCAGGAAATGTTTTGA
TGAGAAAATGTACAAAAGAATATAAAATTCCTGACACTGATATTGTAATTGAGAAAGGTC
GAATGGTCTTTTTACCAATGCATGCCATTCATAATGATCCTGAGTACTTCCCTGATCCTG
AAAAATTTGATCCTGATAGATTTTCTCCTGAAATGGAAAAAGAACGAAATCCATTTACAT
TTTTACCATTTGGTGAAGGAATGAGAGTAAGTTCCGCATACGAAAAAATAGAAAGATTTT
AACAAGAAATAAAAATAATTTTTAGATCTGCATGGGTCTACGTTTCGGTCTAATTCAAAC
ACGTCTTGGCCTTGTTTCGGTTTTACGTAAATACCGTGTAACACTCAATGAGAAAACAGT
TCATCCTATTCGTCTTGATCCAAAAGATGTCACAATGATGCCTTACGGTGGTATTTGGCT
CAACACAGAACACATCTGA

>g63.t9 Gene=g63 Length=253
MMVLSDFLSIKDMKQRVMYLFSNAFPEVCRKLNIQITPKDVQHYFLKIINEAIEYREKNK
IRRNDYFDMLLQLKNEGKLDGDVTNVGRISHTDMLAACFVFFVAGFETSSTALAYALYEL
AVNQELQDRTRDEIEKVLSNYDGKVTYEALMNMNYPGQVISESLRKYTPGNVLMRKCTKE
YKIPDTDIVIEKGRMVFLPMHAIHNDPEYFPDPEKFDPDRFSPEMEKERNPFTFLPFGEG
MRVSSAYEKIERF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g63.t9 Gene3D G3DSA:1.10.630.10 Cytochrome p450 3 244 0e+00
2 g63.t9 PANTHER PTHR24292 CYTOCHROME P450 14 243 0e+00
3 g63.t9 PANTHER PTHR24292:SF95 CYP6A16, ISOFORM B-RELATED 14 243 0e+00
7 g63.t9 PRINTS PR00463 E-class P450 group I signature 93 110 0e+00
10 g63.t9 PRINTS PR00385 P450 superfamily signature 104 121 4e-07
6 g63.t9 PRINTS PR00463 E-class P450 group I signature 113 139 0e+00
9 g63.t9 PRINTS PR00385 P450 superfamily signature 158 169 4e-07
5 g63.t9 PRINTS PR00463 E-class P450 group I signature 199 223 0e+00
4 g63.t9 PRINTS PR00463 E-class P450 group I signature 234 244 0e+00
8 g63.t9 PRINTS PR00385 P450 superfamily signature 235 244 4e-07
1 g63.t9 Pfam PF00067 Cytochrome P450 39 242 0e+00
11 g63.t9 SUPERFAMILY SSF48264 Cytochrome P450 27 243 0e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed