Gene loci information

Transcript annotation

  • This transcript has been annotated as Dynein heavy chain 7, axonemal.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6319 g6319.t1 isoform g6319.t1 16169089 16183982
chr_2 g6319 g6319.t1 exon g6319.t1.exon1 16169089 16169967
chr_2 g6319 g6319.t1 cds g6319.t1.CDS1 16169089 16169967
chr_2 g6319 g6319.t1 exon g6319.t1.exon2 16170766 16171571
chr_2 g6319 g6319.t1 cds g6319.t1.CDS2 16170766 16171571
chr_2 g6319 g6319.t1 exon g6319.t1.exon3 16171808 16171996
chr_2 g6319 g6319.t1 cds g6319.t1.CDS3 16171808 16171996
chr_2 g6319 g6319.t1 exon g6319.t1.exon4 16172069 16172274
chr_2 g6319 g6319.t1 cds g6319.t1.CDS4 16172069 16172274
chr_2 g6319 g6319.t1 exon g6319.t1.exon5 16172342 16173757
chr_2 g6319 g6319.t1 cds g6319.t1.CDS5 16172342 16173757
chr_2 g6319 g6319.t1 exon g6319.t1.exon6 16173873 16173976
chr_2 g6319 g6319.t1 cds g6319.t1.CDS6 16173873 16173976
chr_2 g6319 g6319.t1 exon g6319.t1.exon7 16174116 16175198
chr_2 g6319 g6319.t1 cds g6319.t1.CDS7 16174116 16175198
chr_2 g6319 g6319.t1 exon g6319.t1.exon8 16175563 16177809
chr_2 g6319 g6319.t1 cds g6319.t1.CDS8 16175563 16177809
chr_2 g6319 g6319.t1 exon g6319.t1.exon9 16178067 16178179
chr_2 g6319 g6319.t1 cds g6319.t1.CDS9 16178067 16178179
chr_2 g6319 g6319.t1 exon g6319.t1.exon10 16178249 16179002
chr_2 g6319 g6319.t1 cds g6319.t1.CDS10 16178249 16179002
chr_2 g6319 g6319.t1 exon g6319.t1.exon11 16179073 16179452
chr_2 g6319 g6319.t1 cds g6319.t1.CDS11 16179073 16179452
chr_2 g6319 g6319.t1 exon g6319.t1.exon12 16179630 16179804
chr_2 g6319 g6319.t1 cds g6319.t1.CDS12 16179630 16179804
chr_2 g6319 g6319.t1 exon g6319.t1.exon13 16179866 16181495
chr_2 g6319 g6319.t1 cds g6319.t1.CDS13 16179866 16181495
chr_2 g6319 g6319.t1 exon g6319.t1.exon14 16181578 16181867
chr_2 g6319 g6319.t1 cds g6319.t1.CDS14 16181578 16181867
chr_2 g6319 g6319.t1 exon g6319.t1.exon15 16181928 16182778
chr_2 g6319 g6319.t1 cds g6319.t1.CDS15 16181928 16182778
chr_2 g6319 g6319.t1 exon g6319.t1.exon16 16183002 16183670
chr_2 g6319 g6319.t1 cds g6319.t1.CDS16 16183002 16183670
chr_2 g6319 g6319.t1 exon g6319.t1.exon17 16183733 16183982
chr_2 g6319 g6319.t1 cds g6319.t1.CDS17 16183733 16183982
chr_2 g6319 g6319.t1 TSS g6319.t1 NA NA
chr_2 g6319 g6319.t1 TTS g6319.t1 NA NA

Sequences

>g6319.t1 Gene=g6319 Length=12042
ATGACATCAAGAAATCCAGATTTTTCAAAAGTTCCCGGCACTAGGGACATAATTAGAAGT
GCAATCAACAGCAAAGCAAATGTTGCATACAATACAAAAAAATTATGGCGTGAATTGAAT
CTTCCAACTTCAACTTTCGATTTATCAAGGCCAAATCTTTTTTCACTTCCTGATAAATTG
CTGCGACATTCTGCAAAATTGAAACCTTTGAAAGGCCCGCATGAGAGAAAAAGCAAAAAA
GGAGTGAAAAAAGTAAAATCCTATACAGTTGTTCGACGTGAGCGTGAAGAATTTCGTAAA
AAACTTGTGAGTTTAATAATCAGCTCAGAGGAAGAAATAGCTCGAGATGATGGTTCATTT
CCTGATGCAAAAGAGAAAGAAATTATGCGATATTATTACTACATTAAGCATGGTATTGAT
ACAGTTCATGTTGCACCATTGGACAAAAAAGTTTTCAATCGTGTTCTCAAATTAATTCCT
AAAAAATTAACAAAATGGAATGATGTTCTTGAATCGATTACAACTGAAATGAAAGAAGAC
TATATAACAGCTGTTAAGAAAGCTGTCATTGATTTTGTACTTGGTGATGCATTGAATAAA
AACATTAAAAAATCAGAAGAATCAAGACATAGAATGGAGCTTAAAGAAATTTCAATGAAA
TGGCGACATCGATTTGAAGAAAATCGCATAAAAATTAAAAGAAATCTTTTTGTCATCAAT
CCATGTCTTGCACAAATTGTTGAAATTTGGCATACAAGTTTTAAAAATCTTTGCTATGTT
GATATGGAAAGAATTATTGCAAAAGGACAAGCATATGATTTGAATGAATTTTCAAATACA
ATTACAAGACAAATTGAGAATGCAAAAGCAATGCTACAAGAGAAATGGTTTGGAGCTATT
CAATCGATTATTAGTAAAGGTGGCAAAAAGAAGCTCGTTCCAGATTCATCAAAACCACGT
CTCTTAAAAAGATTTTACAATTGTATAGCAGCATTGATGACTCAACAGTTGCAAGATATG
TGCATAAGAAGCTTGCATGAATATACAAATTATATTTGTGATGTTGGAAAATCAAATCAA
GGTTTTAAGTTGACAATTCTACTTGAAGAGGAAGACACACTTGCATTTGCACCACCTTTT
GCAAGATTTCGTATTGAACTATTAAAATTGATTGATGTAATTGCAAAAGCTGGAAATACA
TTACCAAGAATTGAGACAAAAGTTTATTTAGACTCTGATCCAATTGATGATTTTCTTAAG
CCAGCAATTTCAAATGAAATTATTGAAGATTGTAAAAGAAAAATTTATTTGTTGCTTGAA
GAGCAAAGAATTGGACCAGAATTAAGAATGCAAGATTTTGATGATTATATGGATCTCATG
AATGGCAAAAATATTGATGAAATTGAGAAATTTATTAACAGTAAACCAAAATTTGAAGAA
TACTGTGCATTGATTGAGCACTATAAAGAAATTGAACATGAAATTTCAAGAAAAGTTTGG
GGTGTTGTCACAATGGGTTTTTATGAATTTCATCGTGAAGGATTAATTGATACACTTGAA
AGTCTTGCAAGATTTATGCAGCAGGAATTAATTACAAAAGTCACAGCTGATCAGCAAAAT
GCAATGTTTAAAATGACTGGTGAATATGAAGATATTGCTGCGAAAGTTTTGGCAACACCA
AAAGACACAAAAACTTTGATGGAACTGAAAAAATATGCGACAAAAACTGAGGAAGAAACG
ATTCCAAAAATGGAGAATCAATTGAGATTGAATCTTCAACAACTGCTCTATTTGACTGAT
TATACAATTCTTACACCACTTGAAATTAAACTCAACACAAACACTTTCCAATGGTATTTA
AAAATGCCATCAGTATTTGAAGATCATAAGAAAATTATTGCTGAAAAAGTCATTGAATAT
CAAGACATGCTAAAGAAACGAATTGAATATTTCAAACGTGATTTAGAGCTATATTGGGAG
CAAGTTCAGGAATATGTCAAATGGGGTGATTTAAAAAAGTTGTCAAAGTATAAAAAGAAA
GCCACAATTTTGGATAAAAAACTTCAATTAGCAATGGTAAAAATTGATGAAATAAATGAA
GAAGAAGCAGCTTACGGTTGGGAATTATCGCAATATCCACTTCGTAAGCAATGTGCAGAC
AAACTACAACCATATAAGAAACTTTTCGATGCTGGCCAAGAGTTTATGGATAAGCACGAT
TTATGGATGCACACACAAGTTGGAACCTATGAACCAGAACAAATTGAGGAAACAATTGGA
AATTTATATCGTGCAGTTTATAAACTTGAAAAGCAATTTTCAGATTCACCTTTTACTCAA
CGACTTGCTACAGGAATAAAAAATTCAATTGATGAATTTAAAGTTCATTTGCCATTAATA
AATACCCTTGGAAATCCAGGAATGAAAGATCGTCATTGGGAGCAAGTTAGTGAAATTATT
GGTTTTCCAATTAAAAAATCAGCTGATATGACACTTGAAAAAGTCATCGATTATGGCTTA
GCTGAATATGTTAGTAAATTTGAGTCAATTTCTGAAAGTGCAACAAAAGAAAATAATTTA
GAAAAAGGAATGGCAAAAATGATTAATGAATGGGGTGACATGAATTTCATTGTCAATGCA
TATCGTGATACTGGAACTTATATTTTATCATCAATTGATGACATTCAAGTGCTACTTGAT
GATCATATTATAAAAACACAAACAATGAAAGGTTCACCATACATTAAACCATTTGAAAGA
GAAATTACAGCTTGGGAAAAGAAGCTAATGCTATTGCAAGAAATTCTTGATGATTGGTTG
AAAGTTCAAGCAACTTGGATGTATTTGGAACCAATTTTTGGTAGTCCAGATATTCAATCA
CAAATGCCAGAAGAAGGAAGACGTTTTAGTGCTGTTGATAAAATTTGGAAAGATTTAATG
CGTGCTGTTTATTCTGACACTCAAGTTCTTGCAGTTATTGAAATTGATAAAATGTCTGAA
AAGTTGAAAAAATGTTATTCATTATTAGAACAAATTCAGAAAGGTCTCAATGAATATTTG
GAGAAAAAGCGACTTTATTTTCCACGATTTTTCTTCTTATCAAATGAAGAACTTTTGGAA
ATTCTCTCAGAAACAAAAGATCCAACAAGAGTTCAGCCACATTTGAAGAAATGTTTTGAA
GGAATTTCAACTTTGAATTTTACAGAAACACTTGATGTAACAGTGATGAAATCAAGTGAA
GGTGAAGAAGTTATTCTTGATGATGTCATTTCAACATCAAAAGCAAGAGGTCAAGTCGAA
AAATGGCTGTTAGATCTTGAGAAATCGATGAAAAAATCAATTAGAAATCAAATAATGAAA
GCATTTGAAGCTTATAATGATAAAGAAAGACATGAATGGGTTCTTGATTTTCCTGGTCAA
TCAATTCAATCAATTTCGACAACATGTTGGACATTAGAAATAACTGAATGTTTTATGCAA
GAAAATCCAATTGAAGCTTTGAAAATTTATTATGAAAAATGTAACGAACAAATTGGTCAT
ATTGTTGATCTCGTTAGAGGTGATTTGCCATTACAAAATCGAATTACTTTGGGAGCTTTA
GTTGTACTTGATGTTCATGGGAGAGATGTTCTTGCTGAATTGATTGAAAAAGAAACACAA
AAGGATAATGATTTTAATTGGTTAAGTCAACTTCGTTATTACATTGAAGATGAAGAATTA
GTGACAAAAATGATAAATTCATCATTACGTTATGGCTATGAATATTTGGGAAATACAACT
CGACTCGTTATTACACCATTAACTGATCGATGTTATAGAACTCTTTTTGGAGCATTACAT
CTTCATCTTGGTGGTGCACCTGAAGGTCCCGCTGGCACAGGAAAGACAGAGACTACAAAA
GATTTAGCAAAAGCAGTTGCAAAACAATGTGTTGTCTTCAATTGTTCTGATGGACTCGAC
TACATAGCATTGGGAAAATTCTTCAAAGGTTTAGCATCTTGTGGTGCATGGTCATGTTTT
GATGAATTTAATCGAATTGATTTAGAAGTCTTGTCAGTCGTTGCACAACAAATTTTAACA
ATTCAGAGAGGAATTAATTCTGGTGCAGCAACTTTAATGTTTGAAGGAACTCTACTGCAA
TTAGATCCAACATGTGCTGTTTTTATCACCATGAACCCTGGTTATGCCGGCCGATCTGAA
CTTCCTGATAATTTAAAATCACTCTTCCGATCGGTTGCAATGATGGTCCCAGATTATGCC
TTAATTGCTGAAATTGAACTTTATTCTTATGGCTTTCTACAAGCTAAGCCACTTGCAGTT
AAAATTGTTGCAACATATCGTCTCTGTTCAGAACAATTATCATCACAATCTCATTATGAT
TATGGCATGAGAGCTGTCAAATCAGTTTTAAAAGCTGCTGGTGCTTTAAAATTAAAATAT
CCAAATCAATCAGAAGATATTCTTGTACTAAGATCAATTAAAGATCTGAATTTAGCAAAA
TTCTTAAGTCATGATGTTCCACTTTTTCATGGAATTATTTCTGATCTCTTTCCTGGCATC
ACTTTACCTGATTCTGATTATGAACAATTTAATAGAGCAATGCAAGATGCTTGCAATGAA
AATAACATTCAATGCACAGAAGTTTTCTTAGAAAAAGTTCAGCAACTTTATGAAATGATT
CTCGTCAGACATGGTTTGATGATTGTTGGACATTCATTTGGTGGAAAAACAACTGCTTAT
CGAATGCTTGCAAGAGCACTTGAAATTATGGAAGAAAGAGAACAATTGAACGAACATAAA
GCAATTTTTACTGTCATTAATCCAAAATCAATTACAATGGGACAACTTTATGGACAATTT
GATGCAATTTCACATGAATGGAGTGATGGAATTTTAGCTGTTAGTTATCGACAGTTTGCT
ACAAGTACGACAAATGAAAGAAAATGGTTGATTTTTGATGGACCTGTTGATGCTATATGG
ATTGAAAATATGAATACAGTTTTGGATGATAATCGTAAGCTTTGTTTGATGTCTGGAGAA
ATTATTCAACTTGCACCAACAACAAATTTAATTTTTGAAACGATGGATTTAGAAGCTGCA
AGTCCTGCTACTGTCTCACGTTGTGGAATGATTTATATGGAACCAAATTCCTTAGGATGG
AAGCCATTACTCGATTCATGGATGAATGAAATGCCAAAAGCTGTCAATGATTCTAATAAA
CTTATAATTTTACAAATGTTTATGCGCTTTTGTCCACTTCTTTTATGGTTCATTCGTAAG
GGTGGATTCAAAGAAATGATGCCAACATCAGATTCAAATTTAGTTCGTGGTGTAATGAAT
ATTTTTGATTGTTTTACTGATGATTGGAGAATAGAAGAAACAGTTGTTATTGATAAAGAA
AAAGATGGAAAAGAGCAAACACAACAAGCCAAAGAATTGCAAGCAAAACAAGAAAAGGAA
AAAGAAAAAGATGCATCATTACGTGAAGTTGAAATTCGTGCACAGATTGAAGGAATTTTC
TTCTTTAGTGCTATTTGGGCACTTGGCGGTCCACTTTTTCAAGAAAGTCGTGAAAAATTT
TCGGAAATCTTTCGTGCGTTATTAGAGAAAAATTTCCCTGTAGAACTCAATGAAAAGTAC
AATATTCCACCAGAAGTTCAAGTTCCATCACTTGCAAAACCTTTCATTTTTCCAATTCCA
AAATTGGGTTCAGTTTTTGATTATCGATTTATTCGTGAAGGTAAAGGAAAATGGCGTCCA
TGGGCTGACGATTTGACACAAACTGAATCAGCAATTCCAAGAGATCGACCAGTAAATCAA
ATTATTGTTCCAACAATTGAAACTGTCAGAACTTGTGCATTACTTGATTTACTTGTAAAA
CATTCAAAACATTTAATGATAATTGGTCCAACTGGCACTGGAAAATCTGTTTATGTCAAT
GACTTTTTACTCAAGAAAACAGACACAAATATTTACAAGCCATTGCTAATAAATTTCTCA
GCACAAACAACAGCCAATCAGACACAAGATATAATAATGTCAAAACTTGATAAACGTAGA
AAAGGAATTTTTGGACCACCACTTGGACAGAAATGTGTAATTTTTGTTGATGATCTTTCA
ATGCCAATGAAAGAATCTTATGATGCACAACCACCAATTGAATTACTTCGTATGTGGCTT
GATCATGGAATTTGGTATGATAGAAAAGAAAATATTCCAATGAAGCTTATGGATATTCAA
TTTATTTGTGCTATGGGACCACCAAGTAGTGGCAATACAATTACAGCAAGATTTTCAAGA
CACTTCAATACTTTTGTTATTAATGAATTTGAGGAAAATACACTTGTGACAATTTTCAGT
AAAATTGTTTTATGGCATTTAGATACACGTGGTTTTTCAAAAGATTTTGATCCAAGCATT
GATGAAATTGTTGGTTCAACATTACAAATTTATCAAGAAGCGAGAAAATTTTTACTTCCA
ACACCAACAAAATGTCATTATATTTTCAATTTGCGTGACTTTTCACGAGTTGTTCAAGGT
GTCTTATTATCTACGCCCGAAGGAACTGAAACAATTGATACAATGAGACGATTATGGGCT
CATGAAATTATGAGAGTTTATGGTGATCGATTAATTGATGAAAGAGATCGTCAATGGCTT
TTTGAAATGATTTGTAAAACAATTCAAGAAAAAATGAATATCGATCCTGAAGATCTTTTT
ATTCGATTGCGTGAACCAAAGCAAAAATTGACTGAAACTGACTTAAGAAAATTATTATTT
TGCGATTTTACTAATCCTAAAGCTGACAATAAATTATATTTAGAAGTTGAAGAATTGGAA
TCACTTCGATATACAGTTGAGCAGTATTTGGTTGAATATAACAATATGAGTAAGAAACCA
ATGAATCTCGTCCTATTTCGATTTGCAATTGAACATTTATCAAGAATATGTCGCATAATT
AAGCCACCAAGGAGCCATGCACTTTTAGTCGGCGTTGGCGGAAGTGGCAGACAGTCATTG
ACTAAGTTAGCTGCTCATATTAATGATTATGAAACTTTTCAAGTTGAAATATCAAGACAA
TATGGTGTCACTGAATGGCATGAAGAAATTAAAAATATTGTCAAAAAAGTCAGCTCATCT
GAAAATCAAGGACTTTTCTTATTTACTGATGTTCAAATTAAAGAAGAATCTTTTCTTGAA
GATGTCAGTAATTTACTAAACACTGGTGAAGTTCCAAATCTTTTCAATTTAGAAGAGAAA
AATGAAATTTTAGAAAGAATGCGACAAATTGATCGAGCTAAAGACAAAAGTTTGCAAACA
GATGGAAGTTTGGTTGCACTCTTTAATATGTTTGTTAATCTTGTTCGTGAACAACTTCAT
ATTGTCCTATCAATGTCACCAATTGGAAATGCTTTCAGAAATCGAGTCAGAAAATTTCCA
GCCATTGTCAATTGTTGCACTATCGATTGGTTTCAACCATGGCCACAAGATGCATTACTT
GCGGTTGCTACAAGATTTTTGGGTGATGTCGAACTTTCTGATCAAGAGCGACCTATTTGT
ATTGACATGTGCATGGAATTTCATACATCAACACAAAGTTTATCAGAGCAATTTTTAATT
CGACTCAATCGTCATAATTATGTCACACCGACTTCATATCTTGAACTGATTCAAACTTTT
AAAACTTTGTTGCAAAAGAAAAGAACTGAAGTTAAAAATAGTCGAAATCGTTATTTAGTT
GGAATTGAGCAACTTGAGTCAACATCAAAGCAAGTTGATATTTTAAAAGCAAATCTTGAA
GAATTGCAGCCATCATTAAAACTTGCAGCTGAAACTGTTGCTAAAGAACTTGCACAAGTA
CAAAAAGATCAAGAAAATACAAATGCCAAAAAGGAGCAAGTCGAAATTGATGAAGCAGCT
GCAATTGAACAAGCAACAATTGCGACAGCAATAAAGGAAGAATGTGACATAAAATTAGCT
GAAGCAATACCAAAATTAGAAGAAGCAAATGCTGCACTTCAAACTTTAACACCACAAGAT
ATTACAATTGTTAAAACAATGAAATCACCACCATTGCCTATAAAAATTGTTATGGAAGGA
ATTTGCATCATGAAAGATGTCAAACCTGATAGAATTCCAAATCCAAATGGTGTTGGATTA
GTTGAAGATTATTGGCCAGCATCAAAAAAAGTTTTAACTGATATGAAATTTCTTGATAGT
TTGCTATATTTTGATAAAGACAACATTCCAGCCAGAGTTATACAAAAAGTTCAAGAACGA
GTTTTGACAAATGAAAATTTTGATCCTGAAAAAATTAAAACAGTTTCTGCTGCATGTGAA
GGATTGTGTAAATGGATAATTGCTATTGTTGAATATGATAAAGTCATTAAAGTTGTTGCT
CCAAAAAGGGCTGCTTTTGAAGAAGCTCAAGCTAGTTATAATGGTGCAATGTCAATGTTG
ACAGCTAAAAAGCAACAATTGGCAGGCTTAGAAGCAAATTTAGCTGAATTAAAAAGACAT
CTTGATGAACAAATTGCTATTCATAATGAGAAGCAAGCACAAGTAGAAAAATCAACAAAA
CAACTTGAGCGAGCAACAGAATTGATAACAGGCTTAGGTGGTGAAGGAGCACGTTGGAGT
GAAGCTGCAACTCATTTAGGAAATGTTTATGATACTTTAACTGGTGATGTTCTCATTTCA
TCGGGTGTTGTTTCATATCTCGGTTCATTTACAAGTGATTTTCGATCAAAACAAATTCAA
GAATGGCGTAATAAATGTGAATCAATGGGAATTGTTTGTGCATCAGTTTTTCAACTTCAA
AATGTTCTTGGTGATCCTGTTATGATAAGATCTTGGAATATTCATGGATTACCAAGTGAT
TCATTTTCAATTGAAAGTGCAATTATTATTAATAATGCAAGACGTTGGCCATTATGCATT
GATCCACAAGGTCAAGCAAATAAATGGATTAAAAATATGGAAAAATCAAATCGTTTGGGA
ATAATTCGACTGTCACAGCCTGATTACACTCGTGTTCTTGAAAATTCATTACAATTTGGC
TTGCCAGTGCTGCTTGAAAATATTGGCGAAGACATTGAGCCAATTTTAGAGTCGATTTTA
CTTAGGCAAACATTCAAACAAGGTGGTACATTATGCATAAAATTAGGCGATTCAATTATT
GAATATAACGACAGTTTTCGTTTCTACATTACAACAAAAATGAGAAATCCACATTATTTG
CCTGAAATGGCTGTAAAAGTGACACTTTTGAACTTTATGATAACACCAGCTGGATTACAA
GATCAACTATTAGCAATTACAGTTGCAAGAGAAAGACCAGATTTAGAGACAGAAAAAAAT
CAATTGATTATTCAAAGTGCTGATAATAAAAAGCAATTGAAAGAAATTGAAGATAAAATT
CTTGAAGTTCTGTCACTTGAAGGCAATATTCTTGAAGATGAAACTGCAGTACAAGTTTTG
AGTTCTTCAAAAGCACTTTCAAATGAAATTAGTGAAAAGCAGGCAGTTGCTGAAGTGACA
GAAAAACAAATTGATACAGCTCGACTTGGTTACACTTCAATAGCCAAACATTCAACAATT
TTATTCTTTACAATTGTTGATTTGGCGAATATTGATCCAATGTATCAATATAGTCTTGTT
TGGTTCATAAATTTATTCACAAATGCAATTGATAATACTGAGAAAGTTGATGACTTGGAA
CAACGATTGAATGATTTGACAAGCTTCTTTACTTATAGCCTTTATGTCAATATTTGTAGA
AGTTTATTTGAAAGAGATAAGCTTTTATTTTCATTATTGTTGGCTATAAATTTGCTTAAA
AATGAAGAAAAAATGCAGCAGGAAGAATGGATGTTTTTATTGACTGGTGGAGTAGGTTTA
AGTAATCCTTATAAAAATCCTGCTGATTGGATACCAAAGAAATCTTGGGATGAAATTTGC
AGACTCTCAGAATTTCCACAATTTGCCAACTTACGAGACAGCATAGCAGCAAATATTTCA
GAATGGGAAGCATATTACAAATCAGCAACACCACACATGGCAAATCTTCCTCAACCATGG
CAAAATCTAAGCGATTTTCATAAGATTTTAATTCTTCGCTGTTTCCGCAGTGATAAATTA
GTTCCTGCTATTCAACATTTTGTTCAATCAATTATGGGACAAAAGTATATTGAATCACCG
CCATTTAATCTTACTGCTTCATATGATGATTCACATTGCTGCATTCCGCTCATTTTTATT
CTCACGCCAGGCGCTGATCCGATTTCTAATTTATTAAAATTTGCAGATGATCAAGGCTAT
GGAAATAATCGATTGTTTTCACTATCATTGGGTCAAGGTCAAGGTCCAATAGCGACAAAA
ATGATTGATGAAGGAACAAAGTTCGGCAATTGGGTTGTTTTACAAAATTGTCATTTAGCA
AAGAGTTGGATGGGAAATTTAGAAAGAATTTGCGAAAGTTTGCAACCTGATACAACTCAT
CCAGATTTTCGTCTATGGCTAACTTCTTATCCGTCAGAAGATTTTCCAGTTGTAGTTCTT
CAAAATGGTGTAAAAATGACTAATGAACCACCGAAAGGATTAAAAAACAATATTTTAAGA
TCATTCCAAAGTGATCCAATTAATGATGTCGAATGGTTTGAGTCTTGCAATCAATCGAGA
AATTTCAAATATTTGCTTTATTCGCTTTGTTTTTTCCATGGTGTTGTGCAAGAAAGAAGA
CAATTTGGACCCATTGGTTGGAATATTGGCTATGAATTTAATGAAACTGATTTAAGAATC
AGTGTGAAACAATTGATGATGTTTTTAAATGAATATGAGGAAGTTCAATACACAGCATTA
CGATATCTCACTGGCGAGTGTAATTATGGTGGAAGAGTAACTGACGACTGGGATAGAAGA
TGTTTAAACACGATTTTATCGAAATATTACAATGATGAATTGTTGAAGAATGAAAATTAT
AAATTTGATGAGAGTGGTGTTTATACAGTGCCGAGAGTAAGTGAATATGAAGAATTTGTG
AAGCACATAAAAGGACTGGAGAGCAATGCAAGGCCAGAGATTTTTGGTTTACATGAAAAT
GCTGAAATAATTAAAGATGAACAGGAAACAAATGGACTTTTGTCAAATGTGTTAAAAACT
CAGACAACATCCGGTGGTGAAAGTTTCACAAAGAATGAACGTCTCGTAATTGAAGTATCA
AATGACATTCTCAATCGTCTCCCACAAGAGTTTAATATTGAAGAAGCAAATAAATTATAT
CCAACGAGTTATCATCAAAGTATGAATACAGTTTTAGTTCAAGAAATGGGCAGATTCAAT
AACTTACTTAGTACAATCCGTGCAAGTCTTACCATCGTAATTAAAGCCATAAAAGGTCTC
GTTTCAATAACACCTGATGTTGAGGAAATCGTCAATTCAATTGTGATTGGAAAAATTCCA
TCGCAATGGTCAAAAAAATCTTATCCGAGTTTGAAGCCACTTGGAAGTTATGTCAATGAC
TTTCTTGAGCGTTTGCAATTTTTACAGCGTTGGATGGATGAAGGTCCGCCAGTTAATTAT
TGGATTTCGGGTTTTTTCTTTACACAAGCATTTTTGACTGGCGCACAACAAAATTATGCG
AGAAAATATTCAATTCCAATTGACCTGCTGATGTTTGATTATGAAGTTCAAAAAGTTGAT
GCAATTGATACAATGCCGAATGATGGTGTTTATGTTTATGGCTTATTTCTTGATGGTGCA
CGTTGGGATCGAACTAAAGATTGTCTGCAGGAGTGCCTTCCGCGTATTCTACATGATAAA
ATGCCGTTGATTTTATTGAAGCCAATGAAAAAGGAGGAGTTGAAGGCACGTCACATTTAT
ACATGCCCTGTCTATAAAACATCAGAAAGACGCGGTGTGCTTTCAACAACTGGTCATAGT
ACGAACTTTGTGATTGCAATGTTGTTAAATTGTGCTGAAGATATGAAGCCTGATCATTGG
GTCGAACGTGGATGTGCTTTGCTTTGTCAATTGAGTCAATAA

>g6319.t1 Gene=g6319 Length=4013
MTSRNPDFSKVPGTRDIIRSAINSKANVAYNTKKLWRELNLPTSTFDLSRPNLFSLPDKL
LRHSAKLKPLKGPHERKSKKGVKKVKSYTVVRREREEFRKKLVSLIISSEEEIARDDGSF
PDAKEKEIMRYYYYIKHGIDTVHVAPLDKKVFNRVLKLIPKKLTKWNDVLESITTEMKED
YITAVKKAVIDFVLGDALNKNIKKSEESRHRMELKEISMKWRHRFEENRIKIKRNLFVIN
PCLAQIVEIWHTSFKNLCYVDMERIIAKGQAYDLNEFSNTITRQIENAKAMLQEKWFGAI
QSIISKGGKKKLVPDSSKPRLLKRFYNCIAALMTQQLQDMCIRSLHEYTNYICDVGKSNQ
GFKLTILLEEEDTLAFAPPFARFRIELLKLIDVIAKAGNTLPRIETKVYLDSDPIDDFLK
PAISNEIIEDCKRKIYLLLEEQRIGPELRMQDFDDYMDLMNGKNIDEIEKFINSKPKFEE
YCALIEHYKEIEHEISRKVWGVVTMGFYEFHREGLIDTLESLARFMQQELITKVTADQQN
AMFKMTGEYEDIAAKVLATPKDTKTLMELKKYATKTEEETIPKMENQLRLNLQQLLYLTD
YTILTPLEIKLNTNTFQWYLKMPSVFEDHKKIIAEKVIEYQDMLKKRIEYFKRDLELYWE
QVQEYVKWGDLKKLSKYKKKATILDKKLQLAMVKIDEINEEEAAYGWELSQYPLRKQCAD
KLQPYKKLFDAGQEFMDKHDLWMHTQVGTYEPEQIEETIGNLYRAVYKLEKQFSDSPFTQ
RLATGIKNSIDEFKVHLPLINTLGNPGMKDRHWEQVSEIIGFPIKKSADMTLEKVIDYGL
AEYVSKFESISESATKENNLEKGMAKMINEWGDMNFIVNAYRDTGTYILSSIDDIQVLLD
DHIIKTQTMKGSPYIKPFEREITAWEKKLMLLQEILDDWLKVQATWMYLEPIFGSPDIQS
QMPEEGRRFSAVDKIWKDLMRAVYSDTQVLAVIEIDKMSEKLKKCYSLLEQIQKGLNEYL
EKKRLYFPRFFFLSNEELLEILSETKDPTRVQPHLKKCFEGISTLNFTETLDVTVMKSSE
GEEVILDDVISTSKARGQVEKWLLDLEKSMKKSIRNQIMKAFEAYNDKERHEWVLDFPGQ
SIQSISTTCWTLEITECFMQENPIEALKIYYEKCNEQIGHIVDLVRGDLPLQNRITLGAL
VVLDVHGRDVLAELIEKETQKDNDFNWLSQLRYYIEDEELVTKMINSSLRYGYEYLGNTT
RLVITPLTDRCYRTLFGALHLHLGGAPEGPAGTGKTETTKDLAKAVAKQCVVFNCSDGLD
YIALGKFFKGLASCGAWSCFDEFNRIDLEVLSVVAQQILTIQRGINSGAATLMFEGTLLQ
LDPTCAVFITMNPGYAGRSELPDNLKSLFRSVAMMVPDYALIAEIELYSYGFLQAKPLAV
KIVATYRLCSEQLSSQSHYDYGMRAVKSVLKAAGALKLKYPNQSEDILVLRSIKDLNLAK
FLSHDVPLFHGIISDLFPGITLPDSDYEQFNRAMQDACNENNIQCTEVFLEKVQQLYEMI
LVRHGLMIVGHSFGGKTTAYRMLARALEIMEEREQLNEHKAIFTVINPKSITMGQLYGQF
DAISHEWSDGILAVSYRQFATSTTNERKWLIFDGPVDAIWIENMNTVLDDNRKLCLMSGE
IIQLAPTTNLIFETMDLEAASPATVSRCGMIYMEPNSLGWKPLLDSWMNEMPKAVNDSNK
LIILQMFMRFCPLLLWFIRKGGFKEMMPTSDSNLVRGVMNIFDCFTDDWRIEETVVIDKE
KDGKEQTQQAKELQAKQEKEKEKDASLREVEIRAQIEGIFFFSAIWALGGPLFQESREKF
SEIFRALLEKNFPVELNEKYNIPPEVQVPSLAKPFIFPIPKLGSVFDYRFIREGKGKWRP
WADDLTQTESAIPRDRPVNQIIVPTIETVRTCALLDLLVKHSKHLMIIGPTGTGKSVYVN
DFLLKKTDTNIYKPLLINFSAQTTANQTQDIIMSKLDKRRKGIFGPPLGQKCVIFVDDLS
MPMKESYDAQPPIELLRMWLDHGIWYDRKENIPMKLMDIQFICAMGPPSSGNTITARFSR
HFNTFVINEFEENTLVTIFSKIVLWHLDTRGFSKDFDPSIDEIVGSTLQIYQEARKFLLP
TPTKCHYIFNLRDFSRVVQGVLLSTPEGTETIDTMRRLWAHEIMRVYGDRLIDERDRQWL
FEMICKTIQEKMNIDPEDLFIRLREPKQKLTETDLRKLLFCDFTNPKADNKLYLEVEELE
SLRYTVEQYLVEYNNMSKKPMNLVLFRFAIEHLSRICRIIKPPRSHALLVGVGGSGRQSL
TKLAAHINDYETFQVEISRQYGVTEWHEEIKNIVKKVSSSENQGLFLFTDVQIKEESFLE
DVSNLLNTGEVPNLFNLEEKNEILERMRQIDRAKDKSLQTDGSLVALFNMFVNLVREQLH
IVLSMSPIGNAFRNRVRKFPAIVNCCTIDWFQPWPQDALLAVATRFLGDVELSDQERPIC
IDMCMEFHTSTQSLSEQFLIRLNRHNYVTPTSYLELIQTFKTLLQKKRTEVKNSRNRYLV
GIEQLESTSKQVDILKANLEELQPSLKLAAETVAKELAQVQKDQENTNAKKEQVEIDEAA
AIEQATIATAIKEECDIKLAEAIPKLEEANAALQTLTPQDITIVKTMKSPPLPIKIVMEG
ICIMKDVKPDRIPNPNGVGLVEDYWPASKKVLTDMKFLDSLLYFDKDNIPARVIQKVQER
VLTNENFDPEKIKTVSAACEGLCKWIIAIVEYDKVIKVVAPKRAAFEEAQASYNGAMSML
TAKKQQLAGLEANLAELKRHLDEQIAIHNEKQAQVEKSTKQLERATELITGLGGEGARWS
EAATHLGNVYDTLTGDVLISSGVVSYLGSFTSDFRSKQIQEWRNKCESMGIVCASVFQLQ
NVLGDPVMIRSWNIHGLPSDSFSIESAIIINNARRWPLCIDPQGQANKWIKNMEKSNRLG
IIRLSQPDYTRVLENSLQFGLPVLLENIGEDIEPILESILLRQTFKQGGTLCIKLGDSII
EYNDSFRFYITTKMRNPHYLPEMAVKVTLLNFMITPAGLQDQLLAITVARERPDLETEKN
QLIIQSADNKKQLKEIEDKILEVLSLEGNILEDETAVQVLSSSKALSNEISEKQAVAEVT
EKQIDTARLGYTSIAKHSTILFFTIVDLANIDPMYQYSLVWFINLFTNAIDNTEKVDDLE
QRLNDLTSFFTYSLYVNICRSLFERDKLLFSLLLAINLLKNEEKMQQEEWMFLLTGGVGL
SNPYKNPADWIPKKSWDEICRLSEFPQFANLRDSIAANISEWEAYYKSATPHMANLPQPW
QNLSDFHKILILRCFRSDKLVPAIQHFVQSIMGQKYIESPPFNLTASYDDSHCCIPLIFI
LTPGADPISNLLKFADDQGYGNNRLFSLSLGQGQGPIATKMIDEGTKFGNWVVLQNCHLA
KSWMGNLERICESLQPDTTHPDFRLWLTSYPSEDFPVVVLQNGVKMTNEPPKGLKNNILR
SFQSDPINDVEWFESCNQSRNFKYLLYSLCFFHGVVQERRQFGPIGWNIGYEFNETDLRI
SVKQLMMFLNEYEEVQYTALRYLTGECNYGGRVTDDWDRRCLNTILSKYYNDELLKNENY
KFDESGVYTVPRVSEYEEFVKHIKGLESNARPEIFGLHENAEIIKDEQETNGLLSNVLKT
QTTSGGESFTKNERLVIEVSNDILNRLPQEFNIEEANKLYPTSYHQSMNTVLVQEMGRFN
NLLSTIRASLTIVIKAIKGLVSITPDVEEIVNSIVIGKIPSQWSKKSYPSLKPLGSYVND
FLERLQFLQRWMDEGPPVNYWISGFFFTQAFLTGAQQNYARKYSIPIDLLMFDYEVQKVD
AIDTMPNDGVYVYGLFLDGARWDRTKDCLQECLPRILHDKMPLILLKPMKKEELKARHIY
TCPVYKTSERRGVLSTTGHSTNFVIAMLLNCAEDMKPDHWVERGCALLCQLSQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
44 g6319.t1 CDD cd00009 AAA 1963 2109 5.27814E-4
37 g6319.t1 Coils Coil Coil 1803 1823 -
34 g6319.t1 Coils Coil Coil 2582 2602 -
36 g6319.t1 Coils Coil Coil 2617 2637 -
35 g6319.t1 Coils Coil Coil 2820 2868 -
38 g6319.t1 Coils Coil Coil 3119 3139 -
19 g6319.t1 Gene3D G3DSA:1.20.140.100 - 859 1025 5.9E-58
20 g6319.t1 Gene3D G3DSA:3.20.180.20 - 1026 1124 7.8E-31
33 g6319.t1 Gene3D G3DSA:1.20.58.1120 - 1125 1265 8.8E-41
28 g6319.t1 Gene3D G3DSA:3.40.50.300 - 1266 1416 3.1E-72
25 g6319.t1 Gene3D G3DSA:1.10.8.710 - 1417 1525 4.9E-36
26 g6319.t1 Gene3D G3DSA:3.40.50.300 - 1527 1755 7.1E-89
27 g6319.t1 Gene3D G3DSA:3.40.50.300 - 1941 2490 2.4E-202
22 g6319.t1 Gene3D G3DSA:1.20.920.30 - 2111 2322 2.4E-202
23 g6319.t1 Gene3D G3DSA:1.20.920.20 - 2491 2928 1.2E-105
24 g6319.t1 Gene3D G3DSA:1.20.920.20 - 2550 2903 1.2E-105
31 g6319.t1 Gene3D G3DSA:3.40.50.11510 - 2943 3111 2.5E-68
32 g6319.t1 Gene3D G3DSA:1.10.8.1220 - 3191 3281 8.6E-17
29 g6319.t1 Gene3D G3DSA:3.40.50.300 - 3402 3528 1.5E-38
30 g6319.t1 Gene3D G3DSA:1.10.8.720 - 3529 3697 4.8E-57
21 g6319.t1 Gene3D G3DSA:1.20.1270.280 - 3698 3867 2.5E-17
18 g6319.t1 Gene3D G3DSA:3.10.490.20 - 3868 4012 4.0E-8
47 g6319.t1 MobiDBLite mobidb-lite consensus disorder prediction 1800 1820 -
12 g6319.t1 PANTHER PTHR46454 DYNEIN AXONEMAL HEAVY CHAIN 7-RELATED 505 4012 0.0
13 g6319.t1 PANTHER PTHR46454:SF12 INNER ARM DYNEIN GROUP 3 505 4012 0.0
5 g6319.t1 Pfam PF08393 Dynein heavy chain, N-terminal region 2 716 1121 4.8E-146
3 g6319.t1 Pfam PF12774 Hydrolytic ATP binding site of dynein motor region 1251 1577 2.9E-155
9 g6319.t1 Pfam PF17852 Dynein heavy chain AAA lid domain 1744 1923 3.9E-27
7 g6319.t1 Pfam PF12775 P-loop containing dynein motor region 1932 2110 2.8E-76
8 g6319.t1 Pfam PF17857 AAA+ lid domain 2144 2232 2.8E-19
2 g6319.t1 Pfam PF12780 P-loop containing dynein motor region D4 2301 2563 2.7E-103
1 g6319.t1 Pfam PF12777 Microtubule-binding stalk of dynein motor 2580 2919 2.8E-49
4 g6319.t1 Pfam PF12781 ATP-binding dynein motor region 2950 3170 1.2E-87
11 g6319.t1 Pfam PF03028 Dynein heavy chain region D6 P-loop domain 3413 3527 4.0E-44
10 g6319.t1 Pfam PF18198 Dynein heavy chain AAA lid domain 3549 3701 2.8E-60
6 g6319.t1 Pfam PF18199 Dynein heavy chain C-terminal domain 3708 4009 2.2E-111
40 g6319.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 1740 -
42 g6319.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 1741 1758 -
39 g6319.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1759 1835 -
43 g6319.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 1836 1853 -
41 g6319.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1854 4013 -
46 g6319.t1 SMART SM00382 AAA_5 1281 1420 5.0
45 g6319.t1 SMART SM00382 AAA_5 1961 2108 0.038
14 g6319.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1267 1487 1.91E-25
17 g6319.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1497 1715 1.25E-14
16 g6319.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1947 2224 4.64E-20
15 g6319.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 2297 2572 4.32E-26

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0007018 microtubule-based movement BP
GO:0030286 dynein complex CC
GO:0005524 ATP binding MF
GO:0008569 minus-end-directed microtubule motor activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values