General information for g633.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Glycogen-binding subunit 76A.
Parent gene
- The parent gene g633 is located on chr_3: 4675747..4677413 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g633 | g633.t1 | TSS | g633.t1 | 4668535 | 4668535 |
| chr_3 | g633 | g633.t1 | isoform | g633.t1 | 4669343 | 4675747 |
| chr_3 | g633 | g633.t1 | exon | g633.t1.exon1 | 4669343 | 4669355 |
| chr_3 | g633 | g633.t1 | cds | g633.t1.CDS1 | 4669343 | 4669355 |
| chr_3 | g633 | g633.t1 | exon | g633.t1.exon2 | 4669517 | 4669535 |
| chr_3 | g633 | g633.t1 | cds | g633.t1.CDS2 | 4669517 | 4669535 |
| chr_3 | g633 | g633.t1 | exon | g633.t1.exon3 | 4673355 | 4673679 |
| chr_3 | g633 | g633.t1 | cds | g633.t1.CDS3 | 4673355 | 4673679 |
| chr_3 | g633 | g633.t1 | exon | g633.t1.exon4 | 4673834 | 4675747 |
| chr_3 | g633 | g633.t1 | cds | g633.t1.CDS4 | 4673834 | 4675747 |
| chr_3 | g633 | g633.t1 | TTS | g633.t1 | 4675958 | 4675958 |
Sequences
>g633.t1 Gene=g633 Length=2271
ATGAGTGAAAAAAGATTGCTCTTTGAAATACGTGGGTTGATGAAATCGACACAGCCGGCG
AATAGCTCGTCGCAAGCACCTTCGCTAGTTCAGCTGAACTCTAATTTACAGAATAATCAT
CTACTTCATCATCATCCACAATTCCAGCCTATACAACAGCAGCCACTTGTCCACAGCAGC
AACATTTCAAAAGTGGTCTTTGACGCTGGCAGAGTTAACGCAACTGCAACCCACATTGAA
TTGGAGCAGCAATCAACCAACTGTAACATCACAACTTTACTCAACATGTCTTGTCGCGGG
CGTGCTGAGGCATTTGCGAGAAGTCTTCAGTCACGTCTGAGAACATTGGGTAGTCAAGAC
AATGATACAGATGAAGTAGCTGAAGATGCAGTAGATGGCTCACAATGGATCAATAACAGC
AATAATAACACAGGAATAAATGCTGTGACTGATATACAACCACGAATCAATTCACAGCAT
AATGTTGAGCCATCAGATTCATATTTTGACTTTGATATGGAAGAACCTGAATCACCAGGC
TCACCAATTGATGAATGTGAATATACACGTTTAATTGAGACTACAGGTTCGACACCACAA
GAATCGCAGGCACCTGAATCTGGATTTGTATGTGCATCGCCTTGCTCAACACTCGAAAAT
GAATCACGTGGAAGTGCAAGCAGTTCAGATGCACAATTTTTCGATCCAGAATCATCAGAT
ACTGGCACAGAATTTTATGATTGTCCTACAATAGAAGCTCCCTTACCACATAGACCGCAT
CGTCGTGTATATCATCATTTGAGTCACAATAAAATCGCCATTCGTCCGCCATCACCTATA
GCACAATCGCCTTCAAGCTCGTCATCGTCAGCTACACCTACAAGTAAAATGATGAATGGA
CATGTAAGACTTTTAGAGTCCAACGATTCATCAGAATCGCTGCCACCATCACAATCAACT
AGCTCAAATCTTAATTGTGATGGAGAAAGCAATTCAATGTCGACAGCAAATTCTAATAGC
AATTCAACATTGCAAGATGCTGATGTTGAAATGCCTGCAGAAGTGAATATTGATGAAATT
GCATCAATGAATGATGTTAAATTTGATGAAAATGCTGAAAATGATAAATGTACTTTTCAT
AACTTTGATTCAAGTAGAACATTATTTATCAAATATAATGAAGCTGATGACGAGTATGAA
GATAAATCACCAGAAAAGGAAAGTGTGTCTTTGCCATCACAAGATGGTGAAAATATCGTG
AATGAAAAACCAGTGGAAGAAAAAGAAAAATTGACTGATGGAGAATTCGATCAAAATAAA
GTACTTGATGAAATCACAATGAAAAAGGAAGAAGAACAATTTGAAATGACTGATGTAAAT
CAACAGCAAATTATTGTTGAAGATTACGATAAAGAATTATCAACTGAAACAAATGATGAG
CAAAAGAAAACAAGAAAAGATTCTGATGCAGATTCAGATTATGAAAGACCACCACGCGTG
AGAAGATGTTCATCATTGAAGACTGGTAAAACACCACCAGGCACACCTGGTCGTAAGAAA
ATTGTACGTTTTGCTGATGTGCTTGGACTTGATTTGGCTGATGTAAGAACTTTTCTTGAT
GAAGTACCAAAAGTTCCAAAATCGGCCTATGAAGACCTTGATGTTACACTTCCAACACAT
CAATCGGTTCAATTGAGACCGCCATTGGATAAAGTTTTAGTGCCACTATTTCAACAGCCT
GGCTGTCTACCAAACTTTCTTGAACGTCTACGTGATGCGCAAGTGTGTCTTGAATCTGCT
GCTGTGACTGATCCCATTAATCTCACAATTACAGGCTGTGTACGTGTGAGAAATTTGGAC
TTTCATAAAAGCGTTCATATTCGTTATACACTTGATGGTTGGAGAACATATTCCGATTTA
TCGGCAAGTTATGTGGAAAATTCATGCGATGGTTTTAGTGATAAATTCAGTTTTATATTC
TTCGGCAACTCACTTCAAGTTGGTGGACGTGTTGAGATGGCGATAAGATTTCAAGTGAAA
GGTGAACAATATTGGGATAGCAACTATGGCATGAATTATTGTTTTCAATGTTTGCCATGT
AATACGGGACGAATTAGTCCTATTATGGCTAGTGACAGTAGTCTATCATCGTCATCTGAA
GCTACATCGAGTTATCCTTCTGAAACAATAGACTCAACGTCCTCTAATTCAACTTCTAGC
CATGTTGATACACTTGGTCATCGTCAGTGGTCAAATTCGTTTTTGTATTAA
>g633.t1 Gene=g633 Length=756
MSEKRLLFEIRGLMKSTQPANSSSQAPSLVQLNSNLQNNHLLHHHPQFQPIQQQPLVHSS
NISKVVFDAGRVNATATHIELEQQSTNCNITTLLNMSCRGRAEAFARSLQSRLRTLGSQD
NDTDEVAEDAVDGSQWINNSNNNTGINAVTDIQPRINSQHNVEPSDSYFDFDMEEPESPG
SPIDECEYTRLIETTGSTPQESQAPESGFVCASPCSTLENESRGSASSSDAQFFDPESSD
TGTEFYDCPTIEAPLPHRPHRRVYHHLSHNKIAIRPPSPIAQSPSSSSSSATPTSKMMNG
HVRLLESNDSSESLPPSQSTSSNLNCDGESNSMSTANSNSNSTLQDADVEMPAEVNIDEI
ASMNDVKFDENAENDKCTFHNFDSSRTLFIKYNEADDEYEDKSPEKESVSLPSQDGENIV
NEKPVEEKEKLTDGEFDQNKVLDEITMKKEEEQFEMTDVNQQQIIVEDYDKELSTETNDE
QKKTRKDSDADSDYERPPRVRRCSSLKTGKTPPGTPGRKKIVRFADVLGLDLADVRTFLD
EVPKVPKSAYEDLDVTLPTHQSVQLRPPLDKVLVPLFQQPGCLPNFLERLRDAQVCLESA
AVTDPINLTITGCVRVRNLDFHKSVHIRYTLDGWRTYSDLSASYVENSCDGFSDKFSFIF
FGNSLQVGGRVEMAIRFQVKGEQYWDSNYGMNYCFQCLPCNTGRISPIMASDSSLSSSSE
ATSSYPSETIDSTSSNSTSSHVDTLGHRQWSNSFLY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g633.t1 | Gene3D | G3DSA:2.60.40.2440 | - | 568 | 699 | 3.7E-38 |
| 8 | g633.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 241 | - |
| 7 | g633.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 345 | - |
| 6 | g633.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 297 | - |
| 9 | g633.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 345 | - |
| 10 | g633.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 397 | 416 | - |
| 4 | g633.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 502 | - |
| 5 | g633.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 518 | - |
| 2 | g633.t1 | PANTHER | PTHR12307:SF44 | GLYCOGEN-BINDING SUBUNIT 76A | 194 | 723 | 2.0E-140 |
| 3 | g633.t1 | PANTHER | PTHR12307 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT | 194 | 723 | 2.0E-140 |
| 1 | g633.t1 | Pfam | PF03370 | Carbohydrate/starch-binding module (family 21) | 590 | 695 | 2.5E-26 |
| 12 | g633.t1 | ProSiteProfiles | PS51159 | CBM21 (carbohydrate binding type-21) domain profile. | 587 | 696 | 24.36 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
- This transcript has been annotated with K07189 (protein phosphatase 1 regulatory subunit 3A/B/C/D/E)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
