General information for g633.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glycogen-binding subunit 76A.
Parent gene
- The parent gene g633 is located on chr_3: 4675747..4677413 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g633 | g633.t4 | TSS | g633.t4 | 4668535 | 4668535 |
| chr_3 | g633 | g633.t4 | isoform | g633.t4 | 4669343 | 4674211 |
| chr_3 | g633 | g633.t4 | exon | g633.t4.exon1 | 4669343 | 4669535 |
| chr_3 | g633 | g633.t4 | exon | g633.t4.exon2 | 4673355 | 4673679 |
| chr_3 | g633 | g633.t4 | cds | g633.t4.CDS1 | 4673362 | 4673679 |
| chr_3 | g633 | g633.t4 | exon | g633.t4.exon3 | 4673834 | 4674211 |
| chr_3 | g633 | g633.t4 | cds | g633.t4.CDS2 | 4673834 | 4674211 |
| chr_3 | g633 | g633.t4 | TTS | g633.t4 | 4674752 | 4674752 |
Sequences
>g633.t4 Gene=g633 Length=896
ATGAGTGAAAAAAGTGAAAACGTAGAATAAAATAAAAAGAAGAAGTCTCATATATCTATC
CAAATTAAAAATTAACATAGACAAAAATATTCTCATTCTCACAGGATTTTCGCATTAATT
CGAGTTAGCTGAAGAAAAAAAGAGTATTATCCATCGTGTGTGCTATTATATTAGGATTGC
TCTTTGAAATACGTGGGTTGATGAAATCGACACAGCCGGCGAATAGCTCGTCGCAAGCAC
CTTCGCTAGTTCAGCTGAACTCTAATTTACAGAATAATCATCTACTTCATCATCATCCAC
AATTCCAGCCTATACAACAGCAGCCACTTGTCCACAGCAGCAACATTTCAAAAGTGGTCT
TTGACGCTGGCAGAGTTAACGCAACTGCAACCCACATTGAATTGGAGCAGCAATCAACCA
ACTGTAACATCACAACTTTACTCAACATGTCTTGTCGCGGGCGTGCTGAGGCATTTGCGA
GAAGTCTTCAGTCACGTCTGAGAACATTGGGTAGTCAAGACAATGATACAGATGAAGTAG
CTGAAGATGCAGTAGATGGCTCACAATGGATCAATAACAGCAATAATAACACAGGAATAA
ATGCTGTGACTGATATACAACCACGAATCAATTCACAGCATAATGTTGAGCCATCAGATT
CATATTTTGACTTTGATATGGAAGAACCTGAATCACCAGGCTCACCAATTGATGAATGTG
AATATACACGTTTAATTGAGACTACAGGTTCGACACCACAAGAATCGCAGGCACCTGAAT
CTGGATTTGTATGTGCATCGCCTTGCTCAACACTCGAAAATGAATCACGTGGAAGTGCAA
GCAGTTCAGATGCACAATTTTTCGATCCAGAATCATCAGATACTGGCACAGAATTT
>g633.t4 Gene=g633 Length=232
MKSTQPANSSSQAPSLVQLNSNLQNNHLLHHHPQFQPIQQQPLVHSSNISKVVFDAGRVN
ATATHIELEQQSTNCNITTLLNMSCRGRAEAFARSLQSRLRTLGSQDNDTDEVAEDAVDG
SQWINNSNNNTGINAVTDIQPRINSQHNVEPSDSYFDFDMEEPESPGSPIDECEYTRLIE
TTGSTPQESQAPESGFVCASPCSTLENESRGSASSSDAQFFDPESSDTGTEF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g633.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 232 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
