Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glycogen-binding subunit 76A.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g633 g633.t5 TSS g633.t5 4673340 4673340
chr_3 g633 g633.t5 isoform g633.t5 4673356 4674760
chr_3 g633 g633.t5 exon g633.t5.exon1 4673356 4673679
chr_3 g633 g633.t5 cds g633.t5.CDS1 4673362 4673679
chr_3 g633 g633.t5 exon g633.t5.exon2 4673834 4674760
chr_3 g633 g633.t5 cds g633.t5.CDS2 4673834 4674760
chr_3 g633 g633.t5 TTS g633.t5 4674752 4674752

Sequences

>g633.t5 Gene=g633 Length=1251
GGGTTGATGAAATCGACACAGCCGGCGAATAGCTCGTCGCAAGCACCTTCGCTAGTTCAG
CTGAACTCTAATTTACAGAATAATCATCTACTTCATCATCATCCACAATTCCAGCCTATA
CAACAGCAGCCACTTGTCCACAGCAGCAACATTTCAAAAGTGGTCTTTGACGCTGGCAGA
GTTAACGCAACTGCAACCCACATTGAATTGGAGCAGCAATCAACCAACTGTAACATCACA
ACTTTACTCAACATGTCTTGTCGCGGGCGTGCTGAGGCATTTGCGAGAAGTCTTCAGTCA
CGTCTGAGAACATTGGGTAGTCAAGACAATGATACAGATGAAGTAGCTGAAGATGCAGTA
GATGGCTCACAATGGATCAATAACAGCAATAATAACACAGGAATAAATGCTGTGACTGAT
ATACAACCACGAATCAATTCACAGCATAATGTTGAGCCATCAGATTCATATTTTGACTTT
GATATGGAAGAACCTGAATCACCAGGCTCACCAATTGATGAATGTGAATATACACGTTTA
ATTGAGACTACAGGTTCGACACCACAAGAATCGCAGGCACCTGAATCTGGATTTGTATGT
GCATCGCCTTGCTCAACACTCGAAAATGAATCACGTGGAAGTGCAAGCAGTTCAGATGCA
CAATTTTTCGATCCAGAATCATCAGATACTGGCACAGAATTTTATGATTGTCCTACAATA
GAAGCTCCCTTACCACATAGACCGCATCGTCGTGTATATCATCATTTGAGTCACAATAAA
ATCGCCATTCGTCCGCCATCACCTATAGCACAATCGCCTTCAAGCTCGTCATCGTCAGCT
ACACCTACAAGTAAAATGATGAATGGACATGTAAGACTTTTAGAGTCCAACGATTCATCA
GAATCGCTGCCACCATCACAATCAACTAGCTCAAATCTTAATTGTGATGGAGAAAGCAAT
TCAATGTCGACAGCAAATTCTAATAGCAATTCAACATTGCAAGATGCTGATGTTGAAATG
CCTGCAGAAGTGAATATTGATGAAATTGCATCAATGAATGATGTTAAATTTGATGAAAAT
GCTGAAAATGATAAATGTACTTTTCATAACTTTGATTCAAGTAGAACATTATTTATCAAA
TATAATGAAGCTGATGACGAGTATGAAGATAAATCACCAGAAAAGGAAAGTGTGTCTTTG
CCATCACAAGATGGTGAAAATATCGTGAATGAAAAACCAGTGGAAGAAAAA

>g633.t5 Gene=g633 Length=415
MKSTQPANSSSQAPSLVQLNSNLQNNHLLHHHPQFQPIQQQPLVHSSNISKVVFDAGRVN
ATATHIELEQQSTNCNITTLLNMSCRGRAEAFARSLQSRLRTLGSQDNDTDEVAEDAVDG
SQWINNSNNNTGINAVTDIQPRINSQHNVEPSDSYFDFDMEEPESPGSPIDECEYTRLIE
TTGSTPQESQAPESGFVCASPCSTLENESRGSASSSDAQFFDPESSDTGTEFYDCPTIEA
PLPHRPHRRVYHHLSHNKIAIRPPSPIAQSPSSSSSSATPTSKMMNGHVRLLESNDSSES
LPPSQSTSSNLNCDGESNSMSTANSNSNSTLQDADVEMPAEVNIDEIASMNDVKFDENAE
NDKCTFHNFDSSRTLFIKYNEADDEYEDKSPEKESVSLPSQDGENIVNEKPVEEK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
4 g633.t5 MobiDBLite mobidb-lite consensus disorder prediction 208 228 -
3 g633.t5 MobiDBLite mobidb-lite consensus disorder prediction 261 332 -
2 g633.t5 MobiDBLite mobidb-lite consensus disorder prediction 266 284 -
1 g633.t5 MobiDBLite mobidb-lite consensus disorder prediction 291 332 -
5 g633.t5 MobiDBLite mobidb-lite consensus disorder prediction 384 415 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed