Gene loci information

Transcript annotation

  • This transcript has been annotated as Unconventional myosin ID.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6339 g6339.t1 TSS g6339.t1 16259540 16259540
chr_2 g6339 g6339.t1 isoform g6339.t1 16260032 16267193
chr_2 g6339 g6339.t1 exon g6339.t1.exon1 16260032 16260123
chr_2 g6339 g6339.t1 cds g6339.t1.CDS1 16260032 16260123
chr_2 g6339 g6339.t1 exon g6339.t1.exon2 16263407 16263709
chr_2 g6339 g6339.t1 cds g6339.t1.CDS2 16263407 16263709
chr_2 g6339 g6339.t1 exon g6339.t1.exon3 16263770 16263989
chr_2 g6339 g6339.t1 cds g6339.t1.CDS3 16263770 16263989
chr_2 g6339 g6339.t1 exon g6339.t1.exon4 16264591 16265120
chr_2 g6339 g6339.t1 cds g6339.t1.CDS4 16264591 16265120
chr_2 g6339 g6339.t1 exon g6339.t1.exon5 16265181 16265540
chr_2 g6339 g6339.t1 cds g6339.t1.CDS5 16265181 16265540
chr_2 g6339 g6339.t1 exon g6339.t1.exon6 16265601 16266953
chr_2 g6339 g6339.t1 cds g6339.t1.CDS6 16265601 16266953
chr_2 g6339 g6339.t1 exon g6339.t1.exon7 16267019 16267193
chr_2 g6339 g6339.t1 cds g6339.t1.CDS7 16267019 16267193
chr_2 g6339 g6339.t1 TTS g6339.t1 16267759 16267759

Sequences

>g6339.t1 Gene=g6339 Length=3033
ATGACGATGCGCGAACAAGAGGTCGGTGTTTTTGATTTCGTCCTTCTTGATGAAATCACA
CTGGAGAAATTTATGCAAAATCTTCAAAAGAGGTATCAAGCGGGCAAAATTTACACTTAT
ATTGGCGAGGTCGCAATTTCAGTAAATCCATATCGTGTCATGAATATTTATGGCAATGAT
TACATCAACAAATACAAGAATCGCGAACTTTTTGAAAATCCACCACACATTTATGCAATT
GCTGATGCAGCATATCGTGATCTAAGGCAGCAAAATAAAGACACATGTATTGTCATATCA
GGCGAATCAGGAAGTGGAAAAACAGAAGCATCAAAGATTATCATGAAGTATATTGCGGCA
GTAACAAATGCTCATTCACAACATGACATTGAAAGAGTTAAAAATGTTCTTATTCAGTCA
AATACAATACTTGAGACATTTGGTAATGCAAAGACAAACCGAAATGATAATTCATCAAGA
TTTGGAAAATACATGGACATTGAATTTGATTTTAAACATGAACCAGTTGGTGGAATCATC
ACGAATTTTTTACTTGAAAAATCAAGAATTGTACAACAACAAGAAGGCGAAAGGAATTTT
CATTGTTTTTATCAACTACTTCGTGGTGCTTCAGACGCTGAACTAAAGCAATATGGATTG
ACACGTGATCCATCAAATTACCATTTTACAAATCAAGGTTCAACTGAGACCCTGTCTGAA
AGAAATGATTATAAAACCACACAACAAGCATTTAAAGCATTTGGATTTTCATCTGAAGAG
ATTAACACAATATGGCGAACAGTTGCAGCAATTTTGCAACTAGGAAATATTGAATTTGGC
GTGCAAGATGATGAAATCGTGATTAAAAATCAAAATCAATTGAAAACCGTGTCAAAATTG
TTGTGTGTAACTGAAGCCGAAGCTTCGACTGCTTTGACCCAAAGAGTTATAGCAGCACAT
GGCGATATAATGAAGAAACAGCATGATAAATCACAAGCTGAATTTGGTAGAGATGCATTT
GCAAAGGCAATTTATGAACGTCTTTTTACATGGATTGTTGAACGAATTAATCGTGCTATT
GAAGTGCCCAATAAGAAGCTAGCAAAAAGATTTAATCGTGTCATAGGTGTCGTTGATATC
TATGGATTTGAAATTTTTGAAAAAAATTCCCTTGAACAATTTTGCATCAACTATTGTAAT
GAAAAACTTCAGCAGCTGTTCATTGAACTTGTTTTGAAGCAAGAACAAGAAGAATATCAA
CGTGAGGGCATTGCATGGACAAATGTCGAATACTTTAACAATCAAATCATTTGTGATCTT
GTTGAAGCACCCCATAAGGGAATTATAGCAATTATTGATGAAGCATGCATGACTGTTGGC
AAAATAAATGACGAAATGTTACTTGAAGCTATGGATAAGAAACTTGCTCATCATAAGCAT
TACTCAAGTCGTCAGTTGAAGCCAATGGATAAAGAATTGAAGCACAAACAGGACTTCCGC
ATAACTCATTACGCTGGTGATGTCGCATATTCAATCATTGGCTTTATTGAAAAGAATAAA
GACACACTTTATCAAGATTTCAAACGACTTCTTTACCATTCTAATGACAAAATTATTTCA
TCAATGTGGCCAGAAGGTGCACAAGATATTACAAAAATTACTAAACGACCACTCACAGCT
GGAACAATTTTCATGAAATCAATGAGTGATTTGGTGCAGACACTTTTGTCTAAAGAACCA
TTCTATATCCGATGCATTAAACCAAACGATTCAAAATCGTCAGTATTATTCGATGAAGTT
CGTGTTGAACATCAAGTTCGATATTTGGGATTACTTGAGAATGTTAGAGTTAGACGTGCT
GGTTTTGTTCACAGACAACGATATGACAAGTTCCTCTTGAGATATAAAATGCTCTCACAA
TATACTTGGCCAAATTTCAAAGGACCAACTGATAGAGATGGTGTAAGAGTCTTATTAGAA
GAGAAGCGACTTTTGAATGATTGTAAATTTGGTCATACAAAAATTTTCATTCGTAGTCCT
CGCACACTTTTCCAACTTGAACGTGAAAGAAATGAAATGATTCCAAATATTATAATATTT
TTACAAAAACAAGTTCGTGGTTGGATTGCAAGACAAAATTATAAGAAAATGAAGGCAGCA
ATGACAATAATGAGAGTTTATCGACAGCTCAAGTTACGCAGTTATATAGCAACACTCGCA
CAACGATTTCAGCATGCCAAAAAGATGCGTGATTTTGGAAAGTCAATTCAATGGCCAACA
CCACCAATTGTTGGTCGTAGAGCAGAATATCATTTGAAACAGATGCATGGCAATTGGAGG
GCAGCAATGATTCTTAAAAGATATCCACGCAGTGAATGGCCACAATTACGTTTACAAATT
ATTACAGCTACAGCACTTAAAAAGAGAAGAAAATATTGGGGACAAGAGCGAAAATGGCTT
GGAAATTATCTTGGAATGTCAACAGAAAATTCAAATTATTCTTCCTTTAATTCCAGTGTT
AACAACATTAAAAATACAGAACAATATCATCACATTTTGTTTTCATCATTTGTGAAAAAA
TTCAATAAATGCAACAAATCTGCTGATCGATCGATCATTGTCACTGATACAGCCATTTAT
AAGCTTGATGGAGCTAAAAATAAATTTAAAAATATGAAACGATCTATTGCCATCAGAGAA
ATTTCAAGCATTTCCATCTCACCTGGTCGTGATCAGTTGATTGTTTTTCATTCTCACCAT
AACAATGATTTGATTGTAAACTTGCAAGGTGAACATACGCAACTGAAAGATGATCGAATT
GGTGAAATCATTGGGCATGTCTGTAAAAAATATTATGATTACACAAATCGAGATTTACCT
GTAAATGTTGCATCAACATTCTCTGTAAATTTGGGAGGCAAACCAAGGAAAATTTCAATC
GAGGCTGTTGCAGGAGTTGAAAATGTTGGTTTTAAGCACGCTGGTCAGATTATTGTATTT
GAAGTACCGAGTTCGTATGCGTCATCAATTTAA

>g6339.t1 Gene=g6339 Length=1010
MTMREQEVGVFDFVLLDEITLEKFMQNLQKRYQAGKIYTYIGEVAISVNPYRVMNIYGND
YINKYKNRELFENPPHIYAIADAAYRDLRQQNKDTCIVISGESGSGKTEASKIIMKYIAA
VTNAHSQHDIERVKNVLIQSNTILETFGNAKTNRNDNSSRFGKYMDIEFDFKHEPVGGII
TNFLLEKSRIVQQQEGERNFHCFYQLLRGASDAELKQYGLTRDPSNYHFTNQGSTETLSE
RNDYKTTQQAFKAFGFSSEEINTIWRTVAAILQLGNIEFGVQDDEIVIKNQNQLKTVSKL
LCVTEAEASTALTQRVIAAHGDIMKKQHDKSQAEFGRDAFAKAIYERLFTWIVERINRAI
EVPNKKLAKRFNRVIGVVDIYGFEIFEKNSLEQFCINYCNEKLQQLFIELVLKQEQEEYQ
REGIAWTNVEYFNNQIICDLVEAPHKGIIAIIDEACMTVGKINDEMLLEAMDKKLAHHKH
YSSRQLKPMDKELKHKQDFRITHYAGDVAYSIIGFIEKNKDTLYQDFKRLLYHSNDKIIS
SMWPEGAQDITKITKRPLTAGTIFMKSMSDLVQTLLSKEPFYIRCIKPNDSKSSVLFDEV
RVEHQVRYLGLLENVRVRRAGFVHRQRYDKFLLRYKMLSQYTWPNFKGPTDRDGVRVLLE
EKRLLNDCKFGHTKIFIRSPRTLFQLERERNEMIPNIIIFLQKQVRGWIARQNYKKMKAA
MTIMRVYRQLKLRSYIATLAQRFQHAKKMRDFGKSIQWPTPPIVGRRAEYHLKQMHGNWR
AAMILKRYPRSEWPQLRLQIITATALKKRRKYWGQERKWLGNYLGMSTENSNYSSFNSSV
NNIKNTEQYHHILFSSFVKKFNKCNKSADRSIIVTDTAIYKLDGAKNKFKNMKRSIAIRE
ISSISISPGRDQLIVFHSHHNNDLIVNLQGEHTQLKDDRIGEIIGHVCKKYYDYTNRDLP
VNVASTFSVNLGGKPRKISIEAVAGVENVGFKHAGQIIVFEVPSSYASSI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g6339.t1 CDD cd01378 MYSc_Myo1 22 678 0.000000
14 g6339.t1 Gene3D G3DSA:3.40.850.10 Kinesin 12 621 0.000000
13 g6339.t1 Gene3D G3DSA:1.10.10.820 - 198 252 0.000000
12 g6339.t1 Gene3D G3DSA:1.20.120.720 - 253 359 0.000000
15 g6339.t1 Gene3D G3DSA:1.20.58.530 - 386 578 0.000000
11 g6339.t1 Gene3D G3DSA:3.30.70.3240 - 622 692 0.000019
3 g6339.t1 PANTHER PTHR13140:SF713 UNCONVENTIONAL MYOSIN ID 18 992 0.000000
4 g6339.t1 PANTHER PTHR13140 MYOSIN 18 992 0.000000
8 g6339.t1 PRINTS PR00193 Myosin heavy chain signature 38 57 0.000000
9 g6339.t1 PRINTS PR00193 Myosin heavy chain signature 94 119 0.000000
5 g6339.t1 PRINTS PR00193 Myosin heavy chain signature 142 169 0.000000
7 g6339.t1 PRINTS PR00193 Myosin heavy chain signature 374 402 0.000000
6 g6339.t1 PRINTS PR00193 Myosin heavy chain signature 427 455 0.000000
1 g6339.t1 Pfam PF00063 Myosin head (motor domain) 12 678 0.000000
2 g6339.t1 Pfam PF06017 Unconventional myosin tail, actin- and lipid-binding 803 981 0.000000
20 g6339.t1 ProSiteProfiles PS51456 Myosin motor domain profile. 8 691 252.891000
21 g6339.t1 ProSiteProfiles PS50096 IQ motif profile. 696 722 8.498000
19 g6339.t1 ProSiteProfiles PS51757 Class I myosin tail homology (TH1) domain profile. 807 1004 24.324000
18 g6339.t1 SMART SM00242 MYSc_2a 3 692 0.000000
17 g6339.t1 SMART SM00015 iq_5 693 715 0.004100
10 g6339.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 8 743 0.000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0005515 protein binding MF
GO:0016459 myosin complex CC
GO:0003774 cytoskeletal motor activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values