General information for g6339.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Unconventional myosin ID.
Parent gene
- The parent gene g6339 is located on chr_2: 16260032..16267193 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6339 | g6339.t4 | TSS | g6339.t4 | 16259540 | 16259540 |
| chr_2 | g6339 | g6339.t4 | isoform | g6339.t4 | 16260032 | 16263989 |
| chr_2 | g6339 | g6339.t4 | exon | g6339.t4.exon1 | 16260032 | 16260123 |
| chr_2 | g6339 | g6339.t4 | cds | g6339.t4.CDS1 | 16260032 | 16260123 |
| chr_2 | g6339 | g6339.t4 | exon | g6339.t4.exon2 | 16263407 | 16263709 |
| chr_2 | g6339 | g6339.t4 | cds | g6339.t4.CDS2 | 16263407 | 16263709 |
| chr_2 | g6339 | g6339.t4 | exon | g6339.t4.exon3 | 16263770 | 16263989 |
| chr_2 | g6339 | g6339.t4 | cds | g6339.t4.CDS3 | 16263770 | 16263989 |
| chr_2 | g6339 | g6339.t4 | TTS | g6339.t4 | NA | NA |
Sequences
>g6339.t4 Gene=g6339 Length=615
ATGACGATGCGCGAACAAGAGGTCGGTGTTTTTGATTTCGTCCTTCTTGATGAAATCACA
CTGGAGAAATTTATGCAAAATCTTCAAAAGAGGTATCAAGCGGGCAAAATTTACACTTAT
ATTGGCGAGGTCGCAATTTCAGTAAATCCATATCGTGTCATGAATATTTATGGCAATGAT
TACATCAACAAATACAAGAATCGCGAACTTTTTGAAAATCCACCACACATTTATGCAATT
GCTGATGCAGCATATCGTGATCTAAGGCAGCAAAATAAAGACACATGTATTGTCATATCA
GGCGAATCAGGAAGTGGAAAAACAGAAGCATCAAAGATTATCATGAAGTATATTGCGGCA
GTAACAAATGCTCATTCACAACATGACATTGAAAGAGTTAAAAATGTTCTTATTCAGTCA
AATACAATACTTGAGACATTTGGTAATGCAAAGACAAACCGAAATGATAATTCATCAAGA
TTTGGAAAATACATGGACATTGAATTTGATTTTAAACATGAACCAGTTGGTGGAATCATC
ACGAATTTTTTACTTGAAAAATCAAGAATTGTACAACAACAAGAAGGCGAAAGGAATTTT
CATTGTTTTTATCAA
>g6339.t4 Gene=g6339 Length=205
MTMREQEVGVFDFVLLDEITLEKFMQNLQKRYQAGKIYTYIGEVAISVNPYRVMNIYGND
YINKYKNRELFENPPHIYAIADAAYRDLRQQNKDTCIVISGESGSGKTEASKIIMKYIAA
VTNAHSQHDIERVKNVLIQSNTILETFGNAKTNRNDNSSRFGKYMDIEFDFKHEPVGGII
TNFLLEKSRIVQQQEGERNFHCFYQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g6339.t4 | Gene3D | G3DSA:3.40.850.10 | Kinesin | 2 | 205 | 0.000 |
| 2 | g6339.t4 | PANTHER | PTHR13140:SF291 | UNCONVENTIONAL MYOSIN-IA | 5 | 205 | 0.000 |
| 3 | g6339.t4 | PANTHER | PTHR13140 | MYOSIN | 5 | 205 | 0.000 |
| 5 | g6339.t4 | PRINTS | PR00193 | Myosin heavy chain signature | 38 | 57 | 0.000 |
| 6 | g6339.t4 | PRINTS | PR00193 | Myosin heavy chain signature | 94 | 119 | 0.000 |
| 4 | g6339.t4 | PRINTS | PR00193 | Myosin heavy chain signature | 142 | 169 | 0.000 |
| 1 | g6339.t4 | Pfam | PF00063 | Myosin head (motor domain) | 12 | 205 | 0.000 |
| 10 | g6339.t4 | ProSiteProfiles | PS51456 | Myosin motor domain profile. | 8 | 205 | 90.894 |
| 8 | g6339.t4 | SMART | SM00242 | MYSc_2a | 3 | 205 | 0.000 |
| 7 | g6339.t4 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 8 | 205 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0016459 | myosin complex | CC |
| GO:0003774 | cytoskeletal motor activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed