General information for g6357.t13
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g6357 is located on chr_2: 16467612..16468633 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6357 | g6357.t13 | TTS | g6357.t13 | 16466747 | 16466747 |
| chr_2 | g6357 | g6357.t13 | isoform | g6357.t13 | 16467612 | 16468633 |
| chr_2 | g6357 | g6357.t13 | exon | g6357.t13.exon1 | 16467612 | 16468123 |
| chr_2 | g6357 | g6357.t13 | cds | g6357.t13.CDS1 | 16468008 | 16468123 |
| chr_2 | g6357 | g6357.t13 | exon | g6357.t13.exon2 | 16468243 | 16468633 |
| chr_2 | g6357 | g6357.t13 | cds | g6357.t13.CDS2 | 16468243 | 16468633 |
| chr_2 | g6357 | g6357.t13 | TSS | g6357.t13 | 16468659 | 16468659 |
Sequences
>g6357.t13 Gene=g6357 Length=903
ATGAATTACAAATTAATTTTTATTTCATCATTTTTGTTAATTTCACAATCAACGCAATTA
TTTATTGACAATCCAAAACTTTCCACATGGATGATGGAAAATGGTGAAAAGTTTTTTAAT
CTTAGTGAATCAATTCTAACAAAAGTGCAACAAAGTGTGCTAGACAATTTACAAATTATT
GAAAAACACAATAAGGAAGTGAGCGATTTTATACTTGGATTAAATGAATTTTCTGATTTA
GATAAAAAAGAATTTGTGAAATGTTATTGCAAAACTGTAATGCCAAAACAATTTTTACCT
GATCGACCAAAGCTGGCGAGAGCTAAAGCATTGAATAATTTTACTATTGATAATTTACCA
GAATCATTTAGTTGGAAGGAGCATTTTGAACAGGCAATGAATAAAAAGAAAAATAGTAGC
TGGAATTATGAATTATCACCACAATATATTCTTGATTGTGATAGTAAAAATGATGGTTGT
GACGGTAAGAAATATTTTTTAATTTAGAAACTTTTGTTTTTGAAATTAGAAAAAAATTTG
ATTCTAATATTAGGAAGATTAAATTAATCAATGCTGATTTAGTTTAATCCATAAATAATA
ATGAGTCTAGATTAAAATTAAAAGTACGATTAACAAATAATTTAACTTAAAATTTTCAAA
TCTATATCAATTTTTTGTTCCTTAAATTTATGCTAATTTCCAAAAAATAATATTATTTTA
CAAAAAACCAGAATATTGAACATTTTGTTTAATTTGAATTAAAGAAATCTTCTATAGTAC
ATAAATCTGCATAGATTAAATATAATCCTGAATTATTAAAGCAAAGATTAAATTGATCTT
CAAAAAATTTGGTGCTGCTTTGATAAAATAATTGAATTTTATCTATGACGAATTTTTTTC
AGG
>g6357.t13 Gene=g6357 Length=168
MNYKLIFISSFLLISQSTQLFIDNPKLSTWMMENGEKFFNLSESILTKVQQSVLDNLQII
EKHNKEVSDFILGLNEFSDLDKKEFVKCYCKTVMPKQFLPDRPKLARAKALNNFTIDNLP
ESFSWKEHFEQAMNKKKNSSWNYELSPQYILDCDSKNDGCDGKKYFLI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g6357.t13 | Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 26 | 167 | 1.2E-15 |
| 1 | g6357.t13 | Pfam | PF08246 | Cathepsin propeptide inhibitor domain (I29) | 30 | 85 | 1.3E-7 |
| 6 | g6357.t13 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 17 | - |
| 7 | g6357.t13 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 4 | - |
| 8 | g6357.t13 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 5 | 13 | - |
| 9 | g6357.t13 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 14 | 17 | - |
| 5 | g6357.t13 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 18 | 168 | - |
| 2 | g6357.t13 | SUPERFAMILY | SSF54001 | Cysteine proteinases | 29 | 163 | 3.86E-19 |
| 3 | g6357.t13 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 20 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed