Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Cathepsin L-like.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6357 g6357.t3 TTS g6357.t3 16466747 16466747
chr_2 g6357 g6357.t3 isoform g6357.t3 16466970 16468633
chr_2 g6357 g6357.t3 exon g6357.t3.exon1 16466970 16467062
chr_2 g6357 g6357.t3 cds g6357.t3.CDS1 16466970 16467062
chr_2 g6357 g6357.t3 exon g6357.t3.exon2 16467166 16467533
chr_2 g6357 g6357.t3 cds g6357.t3.CDS2 16467166 16467533
chr_2 g6357 g6357.t3 exon g6357.t3.exon3 16467589 16467612
chr_2 g6357 g6357.t3 cds g6357.t3.CDS3 16467589 16467612
chr_2 g6357 g6357.t3 exon g6357.t3.exon4 16468031 16468633
chr_2 g6357 g6357.t3 cds g6357.t3.CDS4 16468031 16468118
chr_2 g6357 g6357.t3 TSS g6357.t3 16468659 16468659

Sequences

>g6357.t3 Gene=g6357 Length=1088
ATGAATTACAAATTAATTTTTATTTCATCATTTTTGTTAATTTCACAATCAACGCAATTA
TTTATTGACAATCCAAAACTTTCCACATGGATGATGGAAAATGGTGAAAAGTTTTTTAAT
CTTAGTGAATCAATTCTAACAAAAGTGCAACAAAGTGTGCTAGACAATTTACAAATTATT
GAAAAACACAATAAGGAAGTGAGCGATTTTATACTTGGATTAAATGAATTTTCTGATTTA
GATAAAAAAGAATTTGTGAAATGTTATTGCAAAACTGTAATGCCAAAACAATTTTTACCT
GATCGACCAAAGCTGGCGAGAGCTAAAGCATTGAATAATTTTACTATTGATAATTTACCA
GAATCATTTAGTTGGAAGGAGCATTTTGAACGTGTGAAAATGCAAGGAAAATGTGGAAGT
TGTTATGCATTTTCTGTCACTTCTATGTTAGGTAAGAATTTTTTTTCATATTAAATAAAT
TAAAAAATAAGCAAATATTTTAATTTTTAGAGGCAATGAATAAAAAGAAAAATAGTAGCT
GGAATTATGAATTATCACCACAATATATTCTTGATTGTGATAGTAAAAATGATGGTTGTG
ACGGTGGCTGGCCAGCTGAATCATTAATGTTTTTAAAATATAAATCTAAAAATGAAGCTC
CAACACTAGAAAATTATCCATATATTAAAAAACAAAAAGAATGTAAAATGACTGGTTTCC
CAAAAGTAAAACTCAATATTGATGAAGTTTTTGAATTTAAATTTAGAGGCGATGAAAAAC
AAATGAGACTTCACTTAGTTAATTATGGTCCATTAGTTATAACTATGCATGTCAATGATG
ACACAGGTTTATTTCAAAACTACAAGAAAGGAATTTTCTATGAAAAAGAATGCTCAAATG
ATTGTAAAATAATTAATCATGCAATGGTTTTGATTGGATATGGAGTCACAAATGATGATG
AAAAGAAACCTTATTATTTAGTTTTAAATTCTTGGGGAAAGTCATGGGGTGAAGAAGGTT
ATATTCGGATGGCAGCTGATCGAGGAAATAATTGCAATGTTGCTTGCTTTGGAGTTGTTG
CTACTTAA

>g6357.t3 Gene=g6357 Length=190
MNKKKNSSWNYELSPQYILDCDSKNDGCDGGWPAESLMFLKYKSKNEAPTLENYPYIKKQ
KECKMTGFPKVKLNIDEVFEFKFRGDEKQMRLHLVNYGPLVITMHVNDDTGLFQNYKKGI
FYEKECSNDCKIINHAMVLIGYGVTNDDEKKPYYLVLNSWGKSWGEEGYIRMAADRGNNC
NVACFGVVAT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g6357.t3 CDD cd02248 Peptidase_C1A 11 183 4.50956E-51
7 g6357.t3 Gene3D G3DSA:3.90.70.10 Cysteine proteinases 1 188 1.8E-46
2 g6357.t3 PANTHER PTHR12411 CYSTEINE PROTEASE FAMILY C1-RELATED 4 185 7.7E-30
3 g6357.t3 PANTHER PTHR12411:SF774 CATHEPSIN K 4 185 7.7E-30
1 g6357.t3 Pfam PF00112 Papain family cysteine protease 6 184 1.3E-40
6 g6357.t3 ProSitePatterns PS00639 Eukaryotic thiol (cysteine) proteases histidine active site. 133 143 -
5 g6357.t3 SMART SM00645 pept_c1 2 190 1.1E-24
4 g6357.t3 SUPERFAMILY SSF54001 Cysteine proteinases 7 183 1.79E-46

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008234 cysteine-type peptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed