General information for g637.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Homeobox protein prospero.
Parent gene
- The parent gene g637 is located on chr_3: 4713942..4715328 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g637 | g637.t1 | TTS | g637.t1 | 4708069 | 4708069 |
| chr_3 | g637 | g637.t1 | isoform | g637.t1 | 4708364 | 4715328 |
| chr_3 | g637 | g637.t1 | exon | g637.t1.exon1 | 4708364 | 4708543 |
| chr_3 | g637 | g637.t1 | cds | g637.t1.CDS1 | 4708364 | 4708543 |
| chr_3 | g637 | g637.t1 | exon | g637.t1.exon2 | 4708610 | 4708754 |
| chr_3 | g637 | g637.t1 | cds | g637.t1.CDS2 | 4708610 | 4708754 |
| chr_3 | g637 | g637.t1 | exon | g637.t1.exon3 | 4711155 | 4711367 |
| chr_3 | g637 | g637.t1 | cds | g637.t1.CDS3 | 4711155 | 4711367 |
| chr_3 | g637 | g637.t1 | exon | g637.t1.exon4 | 4711688 | 4715328 |
| chr_3 | g637 | g637.t1 | cds | g637.t1.CDS4 | 4711688 | 4715328 |
| chr_3 | g637 | g637.t1 | TSS | g637.t1 | 4715290 | 4715290 |
Sequences
>g637.t1 Gene=g637 Length=4179
ATGTCATCGGCTGAGGAAGATAATTCAGATTGTTTCAGTAGTTTGTTTGGAGACGACGAC
AAGTTAGGATTACTAAAGCAACAGAAAGAACAATTGAAACGAAATCGACAACGCGTAGAC
GCTGGCGAACCGAGAAACTCATACTCGTCAATTCCAAATTTTAGTTCGCGTTCGTCACTA
ATGAGCGGCAGTTTGTACGGGGCTATTTTTAGCCAACAATCGCAAAATTTTGGTGGTCTC
TTTCCCGCCAATTACGCGCCCGCAAAGATGCTTAATGAATTACTCGGAAGACAAGTGAAA
CAGGCACAAGATGCTGCCAGCACAAATGCAAATGATGTGCTAAATCAGATGGAATCGGCA
TCATCGAATAATAATAACAATAATAATAATAATAGTGTAAAAATGGACTTTGAAAATGCA
CCATCACAAAATTCTGATGGCACACAGTCGCCAACACAATCAGCAAATGATCTTGCCCAT
CATATGTTGAGAAATATTCTCCAAGGCAAAAAAGATTTGATGGCATTCGATCAAGAATTG
AGACAGGCGGCTGGTGTTGCGAATGATCGTCATTCGCCCGATTCCAATCAGAATACAATA
ATGAATAATAAGTTGAACAATAATAATAATAATAATAATTTGATAAATAATAATTATGAT
GTGACCAAAAGTGATAATGTTAATAATGGATCAATCGACAACAACAACTGTAGTAGTGAT
CAAGCCAGTGATGTGACAAATAATAATATTAATTCAAATTCCAACAAAAGTGAGAAAAAA
TTATCAAATGGAAGTGTCTCTGATGAGAGCGACGGAAAAAATTTAAATAAAGATCTCGAT
AATAACGAGATTATTGACGATGAAATGATTGTGAATTCTTTGGCTGATGGTAGTAGTTCC
TTACCATCACCTAGTTCTGTGAATAATTGTGTGAAATTAAAAGAAGAACTTATGGATGGT
GAAATGATGGAAAAAGATAGTCGTTCACCATCACCATCACCTTCAGCATCTAACAAAAGT
GATCATGGGACAGCAATTGAATTGAAACGTGCTCGTGTTGAAAATATTGTATCGACAATG
CATTCAAGTCCAGCACTTGGTTCACAAAATTCAATTCAACAGCCACAAGTGAATGGTTGT
AAGAAACGCAAACTCTATCATCCACAACAGCATGATAATAGTGCAGCTGAACGTTATGGA
ATCACAATGGGATTGAATTTGCATAATCTCATGTTAAATGATGAAGATGAGGATGAAGAA
ATGGACACAAATATTCATCAAAAAAGACTAGAGAAAAATATTCTAAAATCACAATTGCGT
TCAATGCAAGAACAATTGGCTGAAATGCAACAAAAATATGTCCAATTATGCAACCGTATG
GAACAAACAAGTGAAACAACTGAAGATATTGACGATGCAACCAGTGATCTTGTTGATGAT
GATTTAATGCGTGAAAATTCAAGTGAAAAACGTTCACCATCAATGAATAGCGTACAACAG
CAGAGAACTCCAAGCAGTTCACCAATTAAGGATCTTCAAGGAAAGCAACAGCAACAGCAG
CAACAACAAGTAAGTCATGCTCAAAGTGTCCTGAATCAAATGATGAGCAAAATGATGTCG
GCTAAGCTGCATCATCCATCAATGCCTTTTAATGGCACACATCCATTAATTCAACATATG
CAGCAACAACAGAATGCACAACCAAATGATCAATTAGGTCATGTTCAACATCCAGCATTC
AGTAATGCTGCTGCAATGTATTTGAGTCAAAAATTACTGATGGAACAAGAAGCACGTCTT
GCAAAAGAGGCTGAAGAACGCCAACAAATGCAACAGCAAATGCAAAAGCAACAGCAAGAA
CAACAACAGAAAGCTCAACAGGAGATGATGGCACGAGAGCAGAATATGATGCACCAACAA
AATGCTAATCAGACACCAAATAATTTGAAAACATCTCCACAGCAACAACAACAGCAGTCG
CAACAAATGAAAGCAGGTAATCCAATTCCAAATGATCATCTCAATGAGCGACTTTCAATG
ATGCGAGCAAATGCAGCAGCAGCTGTTGCAAATTCAATTGGACCAGTGACTGGCTCAGAT
TTAGAAGGACTTGCTGATATTCTTAAATCAGAAATTAATGCATCACTTTCGACTCTTGTT
GATTCAATAATTTCACGCTTTGTTCATCAAAGGCGAATTATTAGCAAACAATCGGAAGCA
GCAGCAGCAGCGGCAGAACAACTCAACAAAGATTTGCTTATGGCATCACAAATTCTCGAT
CGTAAATCGCCACGTACAAAGTCAAGTGGTGGAACAAACAACAGCAACAACGGAAATGGA
AGTGGCGGAAATGCGAGCTCACAATCAGGTAATAATAATGGCAGTAATAATAATAGCACA
GCTAACACTAGTAGTAACAATAATAATACTAACAATAATAATGGTCATCATATGAATCCA
ATGCAACATCATTTGGCTGCCGCGCAGTCAATGTTAAGTCAGCAAATGGCTGCAAATGTT
GTAGCCGTTCCTAATAATAATCCTAATATAAATGCTAATAATAATACTAACAATAATTCA
CCCGCAAATCTCCAACCATCACAAATGCAACGTCATGCAAATGGCACAGCATTTCCGCCA
CTTGGTCAGCACATGCCAGTTTCGCCGGCAATGGTTGCCAATGTGCCCAATGATCCCAAT
AGTCTCAATAGTCTCACGCAAATGAATCCATTAAATTTACCAACTCATGTACGTCCTTCT
CCAACAGCTAATTTATTTCAAGGACCATCAAAAGCACCAAATGGTCCACAAATGAATTCT
GTAGCAGCAGCTGCACTTTACAACTCGATAACAGCGCTTAATGGAGGACCAGCTAATGGC
AATCCCTTTTGTATGCCTGAACCACCTCGTGAAGGAGTCAATGAACAAAATGAAGCACTG
AGTCTAGTAGTGACACCAAAGAAGAAACGACATAAGGTGACTGATACACGCATTACACCA
CGTACTGTTTCAAGAATTCTCGCTCAAGATGCATTATCAGTTGCACAACAAAATCATCTC
GAACAGAGACAGCAGCAAGAACAACAGAATCAAAATCAACAAGTTCAGCAGCAACAACAA
TCAAATGGACCAATTGGTCAATCAATGCAAAATGGTAACAATAAGCCATTTGGTTCAAGC
ACACCATTGCCATCAAATGTACCATCGGAAACACCTTCACCTAGAGGCAATTATCATCAT
TCAGCTCCACCATCAATGTTACCTGTCTCACTGCCAACATCAGTGGCAATCCCAAATCCG
TCATTACATGAATCGCAAGTGTTTTCACCTTATAGTCCTTTCTTTAATCCACATGGACCA
CAACCGACATCAATTCATCATCATATGCATATGTCTTCATCACCGCCAGGCATTGGATCA
ATGATGGACCCACGTGATTCACCGCCATTACCTCATCCACCAACGATGCTTCATCCGGCT
CTTTTAGCAGCCGCTCATCATGGCACTTCACCTGATTATGGACATATGCGTGCTGCAATG
GACGCCAATGATAGAAATTCGGACTGCAACAGTGCCGATATCTCCTATGATGGCATGCAA
CCATCAATATCGTTCTCAAATGCTTTCCTCAAGACATTAAACAATAGCAAAAAGAATCAA
GAACAAAATCAGGAACAATTTCCTTTGACATCAGTTCATTCTGCGACATTAACACCAATG
CATTTGCGTAAAGCAAAATTGATGTTCTTCTGGGTTCGATATCCAAGTTCAGCTGTACTA
AAGATGTACTTTCCAGACATCAAATTTAACAAAAATAACACTGCTCAGTTGGTCAAATGG
TTCTCCAATTTCAGGGAATTTTATTATATTCAAATGGAGAAATATGCAAGACAAAATGTC
ACAGAAGGTGTCAAGAGCGTTGACGATATTCGCATCAGTGGTGATAGTGAAATTTATCGT
GTGCTTAATCTACATTATAATCGCAACAATCACATCGAGGTGCCGCCAAATTTCCGCTTT
GTTGTTGAACAAACACTTCGTGAATTCTTTAGAGCAATTCAAAGTGGAAAAGACACAGAA
CAGTCATGGAAGAAATCAATTTACAAAGTAATTTCACGGATGGATGATCCTGTACCAGAA
TATTTCAAATCACCCAACTTTCTAGAACAATTGGAATAA
>g637.t1 Gene=g637 Length=1392
MSSAEEDNSDCFSSLFGDDDKLGLLKQQKEQLKRNRQRVDAGEPRNSYSSIPNFSSRSSL
MSGSLYGAIFSQQSQNFGGLFPANYAPAKMLNELLGRQVKQAQDAASTNANDVLNQMESA
SSNNNNNNNNNSVKMDFENAPSQNSDGTQSPTQSANDLAHHMLRNILQGKKDLMAFDQEL
RQAAGVANDRHSPDSNQNTIMNNKLNNNNNNNNLINNNYDVTKSDNVNNGSIDNNNCSSD
QASDVTNNNINSNSNKSEKKLSNGSVSDESDGKNLNKDLDNNEIIDDEMIVNSLADGSSS
LPSPSSVNNCVKLKEELMDGEMMEKDSRSPSPSPSASNKSDHGTAIELKRARVENIVSTM
HSSPALGSQNSIQQPQVNGCKKRKLYHPQQHDNSAAERYGITMGLNLHNLMLNDEDEDEE
MDTNIHQKRLEKNILKSQLRSMQEQLAEMQQKYVQLCNRMEQTSETTEDIDDATSDLVDD
DLMRENSSEKRSPSMNSVQQQRTPSSSPIKDLQGKQQQQQQQQVSHAQSVLNQMMSKMMS
AKLHHPSMPFNGTHPLIQHMQQQQNAQPNDQLGHVQHPAFSNAAAMYLSQKLLMEQEARL
AKEAEERQQMQQQMQKQQQEQQQKAQQEMMAREQNMMHQQNANQTPNNLKTSPQQQQQQS
QQMKAGNPIPNDHLNERLSMMRANAAAAVANSIGPVTGSDLEGLADILKSEINASLSTLV
DSIISRFVHQRRIISKQSEAAAAAAEQLNKDLLMASQILDRKSPRTKSSGGTNNSNNGNG
SGGNASSQSGNNNGSNNNSTANTSSNNNNTNNNNGHHMNPMQHHLAAAQSMLSQQMAANV
VAVPNNNPNINANNNTNNNSPANLQPSQMQRHANGTAFPPLGQHMPVSPAMVANVPNDPN
SLNSLTQMNPLNLPTHVRPSPTANLFQGPSKAPNGPQMNSVAAAALYNSITALNGGPANG
NPFCMPEPPREGVNEQNEALSLVVTPKKKRHKVTDTRITPRTVSRILAQDALSVAQQNHL
EQRQQQEQQNQNQQVQQQQQSNGPIGQSMQNGNNKPFGSSTPLPSNVPSETPSPRGNYHH
SAPPSMLPVSLPTSVAIPNPSLHESQVFSPYSPFFNPHGPQPTSIHHHMHMSSSPPGIGS
MMDPRDSPPLPHPPTMLHPALLAAAHHGTSPDYGHMRAAMDANDRNSDCNSADISYDGMQ
PSISFSNAFLKTLNNSKKNQEQNQEQFPLTSVHSATLTPMHLRKAKLMFFWVRYPSSAVL
KMYFPDIKFNKNNTAQLVKWFSNFREFYYIQMEKYARQNVTEGVKSVDDIRISGDSEIYR
VLNLHYNRNNHIEVPPNFRFVVEQTLREFFRAIQSGKDTEQSWKKSIYKVISRMDDPVPE
YFKSPNFLEQLE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 21 | g637.t1 | Coils | Coil | Coil | 425 | 466 | - |
| 20 | g637.t1 | Coils | Coil | Coil | 593 | 636 | - |
| 22 | g637.t1 | Coils | Coil | Coil | 1016 | 1041 | - |
| 19 | g637.t1 | Gene3D | G3DSA:1.10.10.500 | - | 1219 | 1392 | 1.0E-86 |
| 7 | g637.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 52 | - |
| 8 | g637.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 261 | - |
| 16 | g637.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 280 | - |
| 9 | g637.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 280 | - |
| 15 | g637.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 343 | - |
| 13 | g637.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 342 | - |
| 17 | g637.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 484 | 528 | - |
| 18 | g637.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 528 | - |
| 12 | g637.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 601 | 667 | - |
| 11 | g637.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 607 | 667 | - |
| 6 | g637.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 761 | 802 | - |
| 5 | g637.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1017 | 1044 | - |
| 10 | g637.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1060 | 1078 | - |
| 14 | g637.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1060 | 1081 | - |
| 2 | g637.t1 | PANTHER | PTHR12198 | HOMEOBOX PROTEIN PROSPERO/PROX-1/CEH-26 | 203 | 1392 | 8.5E-261 |
| 3 | g637.t1 | PANTHER | PTHR12198:SF0 | HOMEOBOX PROTEIN PROSPERO | 203 | 1392 | 8.5E-261 |
| 1 | g637.t1 | Pfam | PF05044 | Homeo-prospero domain | 1236 | 1389 | 6.6E-82 |
| 23 | g637.t1 | ProSiteProfiles | PS51818 | Homeo-Prospero domain profile. | 1234 | 1392 | 106.075 |
| 4 | g637.t1 | SUPERFAMILY | SSF46689 | Homeodomain-like | 1235 | 1385 | 2.15E-74 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003677 | DNA binding | MF |
| GO:0006355 | regulation of transcription, DNA-templated | BP |
KEGG
Orthology
- This transcript has been annotated with K20211 (prospero homeobox 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
