General information for g637.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Homeobox protein prospero.
Parent gene
- The parent gene g637 is located on chr_3: 4713942..4715328 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g637 | g637.t2 | isoform | g637.t2 | 4713942 | 4715328 |
| chr_3 | g637 | g637.t2 | exon | g637.t2.exon1 | 4713942 | 4715328 |
| chr_3 | g637 | g637.t2 | cds | g637.t2.CDS1 | 4713943 | 4715328 |
| chr_3 | g637 | g637.t2 | TSS | g637.t2 | 4715290 | 4715290 |
| chr_3 | g637 | g637.t2 | TTS | g637.t2 | NA | NA |
Sequences
>g637.t2 Gene=g637 Length=1387
ATGTCATCGGCTGAGGAAGATAATTCAGATTGTTTCAGTAGTTTGTTTGGAGACGACGAC
AAGTTAGGATTACTAAAGCAACAGAAAGAACAATTGAAACGAAATCGACAACGCGTAGAC
GCTGGCGAACCGAGAAACTCATACTCGTCAATTCCAAATTTTAGTTCGCGTTCGTCACTA
ATGAGCGGCAGTTTGTACGGGGCTATTTTTAGCCAACAATCGCAAAATTTTGGTGGTCTC
TTTCCCGCCAATTACGCGCCCGCAAAGATGCTTAATGAATTACTCGGAAGACAAGTGAAA
CAGGCACAAGATGCTGCCAGCACAAATGCAAATGATGTGCTAAATCAGATGGAATCGGCA
TCATCGAATAATAATAACAATAATAATAATAATAGTGTAAAAATGGACTTTGAAAATGCA
CCATCACAAAATTCTGATGGCACACAGTCGCCAACACAATCAGCAAATGATCTTGCCCAT
CATATGTTGAGAAATATTCTCCAAGGCAAAAAAGATTTGATGGCATTCGATCAAGAATTG
AGACAGGCGGCTGGTGTTGCGAATGATCGTCATTCGCCCGATTCCAATCAGAATACAATA
ATGAATAATAAGTTGAACAATAATAATAATAATAATAATTTGATAAATAATAATTATGAT
GTGACCAAAAGTGATAATGTTAATAATGGATCAATCGACAACAACAACTGTAGTAGTGAT
CAAGCCAGTGATGTGACAAATAATAATATTAATTCAAATTCCAACAAAAGTGAGAAAAAA
TTATCAAATGGAAGTGTCTCTGATGAGAGCGACGGAAAAAATTTAAATAAAGATCTCGAT
AATAACGAGATTATTGACGATGAAATGATTGTGAATTCTTTGGCTGATGGTAGTAGTTCC
TTACCATCACCTAGTTCTGTGAATAATTGTGTGAAATTAAAAGAAGAACTTATGGATGGT
GAAATGATGGAAAAAGATAGTCGTTCACCATCACCATCACCTTCAGCATCTAACAAAAGT
GATCATGGGACAGCAATTGAATTGAAACGTGCTCGTGTTGAAAATATTGTATCGACAATG
CATTCAAGTCCAGCACTTGGTTCACAAAATTCAATTCAACAGCCACAAGTGAATGGTTGT
AAGAAACGCAAACTCTATCATCCACAACAGCATGATAATAGTGCAGCTGAACGTTATGGA
ATCACAATGGGATTGAATTTGCATAATCTCATGTTAAATGATGAAGATGAGGATGAAGAA
ATGGACACAAATATTCATCAAAAAAGACTAGAGAAAAATATTCTAAAATCACAATTGCGT
TCAATGCAAGAACAATTGGCTGAAATGCAACAAAAATATGTCCAATTATGCAACCGTATG
GAACAAA
>g637.t2 Gene=g637 Length=462
MSSAEEDNSDCFSSLFGDDDKLGLLKQQKEQLKRNRQRVDAGEPRNSYSSIPNFSSRSSL
MSGSLYGAIFSQQSQNFGGLFPANYAPAKMLNELLGRQVKQAQDAASTNANDVLNQMESA
SSNNNNNNNNNSVKMDFENAPSQNSDGTQSPTQSANDLAHHMLRNILQGKKDLMAFDQEL
RQAAGVANDRHSPDSNQNTIMNNKLNNNNNNNNLINNNYDVTKSDNVNNGSIDNNNCSSD
QASDVTNNNINSNSNKSEKKLSNGSVSDESDGKNLNKDLDNNEIIDDEMIVNSLADGSSS
LPSPSSVNNCVKLKEELMDGEMMEKDSRSPSPSPSASNKSDHGTAIELKRARVENIVSTM
HSSPALGSQNSIQQPQVNGCKKRKLYHPQQHDNSAAERYGITMGLNLHNLMLNDEDEDEE
MDTNIHQKRLEKNILKSQLRSMQEQLAEMQQKYVQLCNRMEQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g637.t2 | Coils | Coil | Coil | 425 | 459 | - |
| 4 | g637.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 52 | - |
| 6 | g637.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 261 | - |
| 8 | g637.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 280 | - |
| 7 | g637.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 280 | - |
| 5 | g637.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 343 | - |
| 3 | g637.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 342 | - |
| 1 | g637.t2 | PANTHER | PTHR12198 | HOMEOBOX PROTEIN PROSPERO/PROX-1/CEH-26 | 203 | 462 | 8.4E-32 |
| 2 | g637.t2 | PANTHER | PTHR12198:SF0 | HOMEOBOX PROTEIN PROSPERO | 203 | 462 | 8.4E-32 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed