General information for g6386.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g6386 is located on chr_2: 16814395..16815096 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6386 | g6386.t1 | TTS | g6386.t1 | 16814024 | 16814024 |
| chr_2 | g6386 | g6386.t1 | isoform | g6386.t1 | 16814395 | 16815096 |
| chr_2 | g6386 | g6386.t1 | exon | g6386.t1.exon1 | 16814395 | 16815096 |
| chr_2 | g6386 | g6386.t1 | cds | g6386.t1.CDS1 | 16814395 | 16815096 |
| chr_2 | g6386 | g6386.t1 | TSS | g6386.t1 | NA | NA |
Sequences
>g6386.t1 Gene=g6386 Length=702
ATGCAAGGTTATAACACGATATTTAACAAAAATGTTTTAAGTAAAGATTTCGATTCATAT
AAGAGAAAAAATATCAGCAGTTCTTGGCTACATAAGACACGACAAGTCAACGATGATAAT
GAAACAATTTATTGGACACTAGATAGTGGCTATATTGATGATAGTGATGATAGCAATGTC
ATTCCGAAAGAGCAAATAAGCAAAACTTTTTCAACAACTATTATTATTATTAATCACATT
GATGAAGAAAATTATTGTCCACAGCTTGGAAAAATTTTAAAAATTTTCTTTCATTTACCA
ATGAAATTCCAACATTTTTTAACAGAGAATATTCAATTGAAATCGGTCATCAAAAAATTG
ATGTTTTTAAATGCTAAACTTTATACAAGCGATGAAAGTTTAAAAGGTTATACACCAAAA
CAGCGTCAGTGTTACTTTGAGGGAGAAAAAAACTTAAAATTTTTCAAATCTTATACAAAA
TCTCACTGTGATTGGGAATGTGTCACTAATTATACACTTGATATTTGTGGTTGCACGAAG
TTTTCAATGCCAGAGATAATAATACTCCAGTATGTGACATGCAGAAGAAAAAGTGTTTAT
TATAACGCTATGTTAACATGGCCTAACAATCGATCATTTTATGAGAATAATGACAATCCA
TGTGATTGCTATGAAACATGCAATGATATAAATATGAAATAA
>g6386.t1 Gene=g6386 Length=233
MQGYNTIFNKNVLSKDFDSYKRKNISSSWLHKTRQVNDDNETIYWTLDSGYIDDSDDSNV
IPKEQISKTFSTTIIIINHIDEENYCPQLGKILKIFFHLPMKFQHFLTENIQLKSVIKKL
MFLNAKLYTSDESLKGYTPKQRQCYFEGEKNLKFFKSYTKSHCDWECVTNYTLDICGCTK
FSMPEIIILQYVTCRRKSVYYNAMLTWPNNRSFYENNDNPCDCYETCNDINMK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g6386.t1 | Gene3D | G3DSA:2.60.470.10 | - | 130 | 231 | 4.5E-14 |
| 6 | g6386.t1 | Gene3D | G3DSA:1.10.287.820 | - | 136 | 227 | 4.5E-14 |
| 2 | g6386.t1 | PANTHER | PTHR11690 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED | 38 | 231 | 3.1E-12 |
| 3 | g6386.t1 | PANTHER | PTHR11690:SF243 | PICKPOCKET 12-RELATED | 38 | 231 | 3.1E-12 |
| 1 | g6386.t1 | Pfam | PF00858 | Amiloride-sensitive sodium channel | 94 | 231 | 4.9E-16 |
| 4 | g6386.t1 | ProSitePatterns | PS01206 | Amiloride-sensitive sodium channels signature. | 158 | 178 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0005272 | sodium channel activity | MF |
| GO:0006814 | sodium ion transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed