General information for g6402.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Ubiquitin-conjugating enzyme E2-24 kDa.
Parent gene
- The parent gene g6402 is located on chr_2: 16868670..16870763 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6402 | g6402.t2 | isoform | g6402.t2 | 16866814 | 16870763 |
| chr_2 | g6402 | g6402.t2 | exon | g6402.t2.exon1 | 16866814 | 16868328 |
| chr_2 | g6402 | g6402.t2 | TTS | g6402.t2 | 16866822 | 16866822 |
| chr_2 | g6402 | g6402.t2 | cds | g6402.t2.CDS1 | 16868316 | 16868328 |
| chr_2 | g6402 | g6402.t2 | exon | g6402.t2.exon2 | 16868386 | 16868470 |
| chr_2 | g6402 | g6402.t2 | cds | g6402.t2.CDS2 | 16868386 | 16868470 |
| chr_2 | g6402 | g6402.t2 | exon | g6402.t2.exon3 | 16868537 | 16868684 |
| chr_2 | g6402 | g6402.t2 | cds | g6402.t2.CDS3 | 16868537 | 16868684 |
| chr_2 | g6402 | g6402.t2 | exon | g6402.t2.exon4 | 16868747 | 16868820 |
| chr_2 | g6402 | g6402.t2 | cds | g6402.t2.CDS4 | 16868747 | 16868820 |
| chr_2 | g6402 | g6402.t2 | exon | g6402.t2.exon5 | 16868878 | 16869288 |
| chr_2 | g6402 | g6402.t2 | cds | g6402.t2.CDS5 | 16868878 | 16869160 |
| chr_2 | g6402 | g6402.t2 | exon | g6402.t2.exon6 | 16870541 | 16870763 |
| chr_2 | g6402 | g6402.t2 | TSS | g6402.t2 | NA | NA |
Sequences
>g6402.t2 Gene=g6402 Length=2456
TGTTGTTGAAGTGATCTTTTTTAACTGAAATTAATTGCAAAAATACTTTTCGGCTTGTCG
TTATTTACAAAAATTTTATGGGGATTGAAACTTTTGAATTTTATGGCGTTAACAAGTGAA
GAAAAAAGTTTCAAAAAAATTCATTTCAATTTTCTGCAGCAGACAGTGTTTTCTTTAACA
AATTAGTTTAGTGAATAATTAGTGACTATTTGTTAATAAAAAGATAATTGTCTTTCCTTT
TCCATTGCATCTATATATTTTGGAGAAGTTGCTAGAAATTTCACTAATTTAAAGTGAAAG
AATTAGACAAACTCAAATTTTTGATTAAATTATAAAATATATAAAACAAAGATGTCAACT
ACATCAGCAGGAAGTGGTGGTGGCTCAAGTGGAGCAGGTGGAAGTCGTCGAAATGGTGGG
AGTAGTGCAGGTAATAGTTCAAGTTCTACAGAACCAAAACCTGAGACAAAGGAAACAAAA
TCGAATCCAAAAATATCAAAAGCTTTGGGAACATCGGCAAAACGTATGCAAAAAGAACTT
GCCGAAATCACTCTCGATCCTCCACCAAATTGCTCAGCCGGTCCAAAAGGTGATAATTTG
TATGAATGGGTTTCTACAATTCTTGGACCTCCAGGTTCTGTTTATGAAGGAGGAGTGTTC
TTTTTGGATATACATTTCCCACCAGAATATCCTTTTAAACCTCCAAAAGTTTTATTTAGA
ACTAGAATATATCATTGCAATATAAATAGTCAAGGCGTCATTTGTTTGGATATTTTAAAA
GATAACTGGTCACCCGCACTGACAATTTCAAAAGTTTTACTATCAATTTGTTCTTTGTTA
ACAGACTGTAATCCAGCTGATCCGCTTGTTGGAAGCATTGCTACACAATATTTACAAAAT
AGAGAGGAACATGATCGAATCGCACGCCTTTGGACTAAACGATATGCTACGTGATTTCCT
TATTCAACTAACTCTCATCCATTAAGCAAAAACAAGAAAATTGAATTTGAAGCAAATAAG
AAGTTGTATTTCAAACCATGTTGTATTTACAATAAAGGTGAAGAAATAAAATAATATTAA
ATAATTAATGGATATCAAACAAAAAAAGAATCACACACACACATACTGATAACAAAACAA
AAACTCTTAATGGACATAAAATATTTATAATCATCATTTTCTGCTGCGATTTGTCTCCCA
AAATATGAATGAAAAAAATTGTTCATTAAAAACTCACTCTCAACTATATTCAATCATAAC
CATTAGATTTTTTTGTCAAATTGATACAATCTTTCTTTAAGAAAAATAAAAATTTAATGC
AGAAGCTTCGATAAAAAATTATAATAAATTTGATGAGAATGACGAATTTTTTGAAGAATG
GTGAGAACGCGTAAATTAGATATATCAAGTTTAGGAATTGTGAGAAAATAAGAATGAATT
TAGTTATCAAATACAAACCCATGCATTAAGTTTTTCTTCATTGACTGAGTGATGTGCTCA
TTTATAATTTGTAAATTTTAAATGCATAGTTTTTTGAACGTATCCCAATTATACATATTC
GTAAAGAATTTCTTACGTACATAATGAATATTAATAAATTTAAACTATCTAAAAATGAAT
GAATGAATGATTAAAGTGGAAAAAAATTCTTGAATTAATGCAAAATAATGATTTTCTTAA
TACATCATAATATTGATGACCCTAAAGCCTAGTTAGGTGATAATTTCTGTTTTCTAATTG
AACTAATAAATAACTAAGAAAAAGTGATGTGACAAAAAATATAATATTAATTTTGTGTTG
CATTTTAAACACAAACAAACATACCCTTGTATTTTAATCATGATGCTAAATGAAAGTAAT
GGAAAAGAATGGCTTAACCATTTTCATATGGTAAAATTTTAAAACTCATTTTGATTTTCA
TGGTTTTGTCCAACTTGTACATTCATGATTAACTTCTTCAACGATTTCCCTTGTCTCTTA
AAATGATTAATAAAAGTGCGAAAATAAACATTTTTAGTTTTTAATAGAAATTTCAAATGA
ATGTATTTTTTATAAATATAAAAAGCTATTCAAAATTAAATGCTGATAATAAGAAAGAAT
GAAAGATAGTTTAAAAAAGAAAAATGGACTGTATGCGAAAATTGAAGGAAAAAAATTAAT
TAAAATAATCTGCAACTTCTTTTTCATTTTCATGTGTAAAAGCATTGCATTAAAAAATCC
TAGACATTAAAAGAATGATTCAACATAAGAAATGAAAATAGGATGAATCCTATATAAAAT
GATGATATAGAGCATCCATTCTTATATTAAAATTAATTGTGGTATGAAACAAAAAAGGAC
TAAAAATTATTGTGAGACATCATTTTTTTCAAGTTTTGTGGAGATGCATGAAAAAATGAA
ATTAATGTGTATGAATAAAAAAAATAAAAAAAAGTTCTAAAATGTACTCGAAAAAT
>g6402.t2 Gene=g6402 Length=200
MSTTSAGSGGGSSGAGGSRRNGGSSAGNSSSSTEPKPETKETKSNPKISKALGTSAKRMQ
KELAEITLDPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFPPEYPFKPPKV
LFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQY
LQNREEHDRIARLWTKRYAT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g6402.t2 | CDD | cd00195 | UBCc | 57 | 195 | 6.87208E-69 |
| 5 | g6402.t2 | Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 28 | 200 | 1.5E-73 |
| 9 | g6402.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - |
| 10 | g6402.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - |
| 2 | g6402.t2 | PANTHER | PTHR24068:SF62 | UBIQUITIN-CONJUGATING ENZYME E2 E2 | 30 | 199 | 2.1E-100 |
| 3 | g6402.t2 | PANTHER | PTHR24068 | UBIQUITIN-CONJUGATING ENZYME E2 | 30 | 199 | 2.1E-100 |
| 1 | g6402.t2 | Pfam | PF00179 | Ubiquitin-conjugating enzyme | 58 | 193 | 7.1E-47 |
| 7 | g6402.t2 | ProSitePatterns | PS00183 | Ubiquitin-conjugating enzymes active site. | 127 | 142 | - |
| 11 | g6402.t2 | ProSiteProfiles | PS50127 | Ubiquitin-conjugating enzymes family profile. | 57 | 189 | 42.112 |
| 8 | g6402.t2 | SMART | SM00212 | ubc_7 | 57 | 200 | 2.1E-72 |
| 4 | g6402.t2 | SUPERFAMILY | SSF54495 | UBC-like | 45 | 199 | 9.44E-61 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K20217 (ubiquitin-conjugating enzyme E2 E)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
