Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Ubiquitin-conjugating enzyme E2-24 kDa.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6402 g6402.t5 TTS g6402.t5 16868058 16868058
chr_2 g6402 g6402.t5 isoform g6402.t5 16868316 16869160
chr_2 g6402 g6402.t5 exon g6402.t5.exon1 16868316 16868328
chr_2 g6402 g6402.t5 exon g6402.t5.exon2 16868386 16868470
chr_2 g6402 g6402.t5 exon g6402.t5.exon3 16868537 16868684
chr_2 g6402 g6402.t5 cds g6402.t5.CDS1 16868674 16868684
chr_2 g6402 g6402.t5 exon g6402.t5.exon4 16868743 16868820
chr_2 g6402 g6402.t5 cds g6402.t5.CDS2 16868743 16868820
chr_2 g6402 g6402.t5 exon g6402.t5.exon5 16868878 16869160
chr_2 g6402 g6402.t5 cds g6402.t5.CDS3 16868878 16869160
chr_2 g6402 g6402.t5 TSS g6402.t5 16869268 16869268

Sequences

>g6402.t5 Gene=g6402 Length=607
ATGTCAACTACATCAGCAGGAAGTGGTGGTGGCTCAAGTGGAGCAGGTGGAAGTCGTCGA
AATGGTGGGAGTAGTGCAGGTAATAGTTCAAGTTCTACAGAACCAAAACCTGAGACAAAG
GAAACAAAATCGAATCCAAAAATATCAAAAGCTTTGGGAACATCGGCAAAACGTATGCAA
AAAGAACTTGCCGAAATCACTCTCGATCCTCCACCAAATTGCTCAGCCGGTCCAAAAGGT
GATAATTTGTATGAATGGGTTTCTACAATTCTTGGACCTCCAGGTTCTGTTTATGAAGGA
GGAGTGTTCTTTTTGGATATACATTTCCCACCAGAATATCCTTTTAAACCTCCAAAAGTA
AGTTTTATTTAGAACTAGAATATATCATTGCAATATAAATAGTCAAGGCGTCATTTGTTT
GGATATTTTAAAAGATAACTGGTCACCCGCACTGACAATTTCAAAAGTTTTACTATCAAT
TTGTTCTTTGTTAACAGACTGTAATCCAGCTGATCCGCTTGTTGGAAGCATTGCTACACA
ATATTTACAAAATAGAGAGGAACATGATCGAATCGCACGCCTTTGGACTAAACGATATGC
TACGTGA

>g6402.t5 Gene=g6402 Length=123
MSTTSAGSGGGSSGAGGSRRNGGSSAGNSSSSTEPKPETKETKSNPKISKALGTSAKRMQ
KELAEITLDPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFPPEYPFKPPKV
SFI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g6402.t5 CDD cd00195 UBCc 57 123 1.69263E-31
7 g6402.t5 Gene3D G3DSA:3.10.110.10 Ubiquitin Conjugating Enzyme 28 123 2.1E-33
5 g6402.t5 MobiDBLite mobidb-lite consensus disorder prediction 1 56 -
6 g6402.t5 MobiDBLite mobidb-lite consensus disorder prediction 1 35 -
2 g6402.t5 PANTHER PTHR24068:SF62 UBIQUITIN-CONJUGATING ENZYME E2 E2 28 122 1.8E-40
3 g6402.t5 PANTHER PTHR24068 UBIQUITIN-CONJUGATING ENZYME E2 28 122 1.8E-40
1 g6402.t5 Pfam PF00179 Ubiquitin-conjugating enzyme 58 123 1.4E-18
8 g6402.t5 ProSiteProfiles PS50127 Ubiquitin-conjugating enzymes family profile. 57 123 22.022
4 g6402.t5 SUPERFAMILY SSF54495 UBC-like 44 123 1.88E-27

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed