General information for g6404.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial.
Parent gene
- The parent gene g6404 is located on chr_2: 16872827..16876184 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6404 | g6404.t1 | TTS | g6404.t1 | 16872207 | 16872207 |
| chr_2 | g6404 | g6404.t1 | isoform | g6404.t1 | 16872242 | 16873493 |
| chr_2 | g6404 | g6404.t1 | exon | g6404.t1.exon1 | 16872242 | 16872833 |
| chr_2 | g6404 | g6404.t1 | cds | g6404.t1.CDS1 | 16872242 | 16872833 |
| chr_2 | g6404 | g6404.t1 | exon | g6404.t1.exon2 | 16872889 | 16873493 |
| chr_2 | g6404 | g6404.t1 | cds | g6404.t1.CDS2 | 16872889 | 16873493 |
| chr_2 | g6404 | g6404.t1 | TSS | g6404.t1 | 16873554 | 16873554 |
Sequences
>g6404.t1 Gene=g6404 Length=1197
ATGATTCGAGGAAGAAGTTGTTTAGTGTCATTAATAAAAAACCGATGTAAAACTCAAGTG
TTTAATCATGCAAGAGTATTTTGTACTAAAGAAGAAAAAAAGGAAGAAACTAATTTTGAT
GAAGAAAAAGTCAAGAGAGAAAAGCAACATGAATTCTTTACTAAAAGAGCTTTAATTTTA
AGAGGATCTTTCGAAACAATCGAGGATAAAAATAAAGGCTCATATCTAGAGATGATAGAT
ATTTTTATAAATAAAGACGTTCACAGAAGGAATCATGTTGAATTTATTTATGCGGCATTA
AAAAATATGAAAGATTTTGGTGTTATTAGAGATTTGGAAGTATACAAAAAGTTAATTGAT
GTTATGCCGAAAGGGAAATTTATTCCTACAAATTTGTTTCAAGTAGAATTTCAACATTAT
CCAAAACAGCAACAATGTATAATTGATCTTTTGGATCAAATGGAAGATAATGGTGTCATA
CCTGATTATGAAATGGAAGATCAATTAATTAACATATTTGGAAGACGAGGACATCCTGTG
AGGAAATTCTGGAGAATGATGTATTGGATGCCGAAATTTAAAAATTTATCACCTTGGATT
GTTCCTAATCCTCCACCAAATGACGAATATGAACTAGCAAAATTAGCAGTTGAACGAATG
TGCTCAGTAGATTTGCAATCAAAAATCAGTACATTTTACACGAGTGATGTTGAAAGTTCG
ATCGATGACACATGGATTGTGAGTGGGCAGAGTCCAATTCAACAAGAATTGCTCGCAAAG
CATAACAGAGAGAAAGGATTATATATTCAAGGACCATTTAAAATATGGCTGAGATACAAA
TGTATAAACTATTATCTTCTAAGAAGTGATTCTCCTGAGAATTTTGTTGAATTCAACGAT
CAAATCGAAATTGACGATGTGAGTGATATCGATGTACCGATTTTTTCGTTAGGACAAGTA
AAACCTAAAAGTAATAAATTAGCCATTATGCGATCTGTGCATGAACAAAAAGATGGAACT
GTTTATGCAATATGTTGCATAGGTCAGCACACAAAAGATACACTTTTATCTTGGCTAAGA
TTATTAGAAAAGAATGGAAATCCTTGCTTAGAAAATCTTATTGTACTTTTTAAATTAGCT
ACACCAGATAACACAACAGAAATAGTAGTGCAATCAAAAGATCCGGTTAAAACTTAA
>g6404.t1 Gene=g6404 Length=398
MIRGRSCLVSLIKNRCKTQVFNHARVFCTKEEKKEETNFDEEKVKREKQHEFFTKRALIL
RGSFETIEDKNKGSYLEMIDIFINKDVHRRNHVEFIYAALKNMKDFGVIRDLEVYKKLID
VMPKGKFIPTNLFQVEFQHYPKQQQCIIDLLDQMEDNGVIPDYEMEDQLINIFGRRGHPV
RKFWRMMYWMPKFKNLSPWIVPNPPPNDEYELAKLAVERMCSVDLQSKISTFYTSDVESS
IDDTWIVSGQSPIQQELLAKHNREKGLYIQGPFKIWLRYKCINYYLLRSDSPENFVEFND
QIEIDDVSDIDVPIFSLGQVKPKSNKLAIMRSVHEQKDGTVYAICCIGQHTKDTLLSWLR
LLEKNGNPCLENLIVLFKLATPDNTTEIVVQSKDPVKT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g6404.t1 | PANTHER | PTHR13113 | ECSIT EVOLUTIONARILY CONSERVED SIGNALING INTERMEDIATE IN TOLL PATHWAYS | 22 | 387 | 0 |
| 1 | g6404.t1 | Pfam | PF06239 | Evolutionarily conserved signalling intermediate in Toll pathway | 34 | 248 | 0 |
| 2 | g6404.t1 | Pfam | PF14784 | C-terminal domain of the ECSIT protein | 251 | 379 | 0 |
| 4 | g6404.t1 | SMART | SM01284 | ECIST_Cterm_2 | 251 | 380 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K04405 (evolutionarily conserved signaling intermediate in Toll pathway)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
