General information for g6404.t15
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial.
Parent gene
- The parent gene g6404 is located on chr_2: 16872827..16876184 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6404 | g6404.t15 | TTS | g6404.t15 | 16872207 | 16872207 |
| chr_2 | g6404 | g6404.t15 | isoform | g6404.t15 | 16872242 | 16873493 |
| chr_2 | g6404 | g6404.t15 | exon | g6404.t15.exon1 | 16872242 | 16872833 |
| chr_2 | g6404 | g6404.t15 | exon | g6404.t15.exon2 | 16872885 | 16873493 |
| chr_2 | g6404 | g6404.t15 | cds | g6404.t15.CDS1 | 16872885 | 16873493 |
| chr_2 | g6404 | g6404.t15 | TSS | g6404.t15 | 16873554 | 16873554 |
Sequences
>g6404.t15 Gene=g6404 Length=1201
ATGATTCGAGGAAGAAGTTGTTTAGTGTCATTAATAAAAAACCGATGTAAAACTCAAGTG
TTTAATCATGCAAGAGTATTTTGTACTAAAGAAGAAAAAAAGGAAGAAACTAATTTTGAT
GAAGAAAAAGTCAAGAGAGAAAAGCAACATGAATTCTTTACTAAAAGAGCTTTAATTTTA
AGAGGATCTTTCGAAACAATCGAGGATAAAAATAAAGGCTCATATCTAGAGATGATAGAT
ATTTTTATAAATAAAGACGTTCACAGAAGGAATCATGTTGAATTTATTTATGCGGCATTA
AAAAATATGAAAGATTTTGGTGTTATTAGAGATTTGGAAGTATACAAAAAGTTAATTGAT
GTTATGCCGAAAGGGAAATTTATTCCTACAAATTTGTTTCAAGTAGAATTTCAACATTAT
CCAAAACAGCAACAATGTATAATTGATCTTTTGGATCAAATGGAAGATAATGGTGTCATA
CCTGATTATGAAATGGAAGATCAATTAATTAACATATTTGGAAGACGAGGACATCCTGTG
AGGAAATTCTGGAGAATGATGTATTGGATGCCGAAATTTAAAAATTTATCACCTTGGATT
GTTCCGTAATAATCCTCCACCAAATGACGAATATGAACTAGCAAAATTAGCAGTTGAACG
AATGTGCTCAGTAGATTTGCAATCAAAAATCAGTACATTTTACACGAGTGATGTTGAAAG
TTCGATCGATGACACATGGATTGTGAGTGGGCAGAGTCCAATTCAACAAGAATTGCTCGC
AAAGCATAACAGAGAGAAAGGATTATATATTCAAGGACCATTTAAAATATGGCTGAGATA
CAAATGTATAAACTATTATCTTCTAAGAAGTGATTCTCCTGAGAATTTTGTTGAATTCAA
CGATCAAATCGAAATTGACGATGTGAGTGATATCGATGTACCGATTTTTTCGTTAGGACA
AGTAAAACCTAAAAGTAATAAATTAGCCATTATGCGATCTGTGCATGAACAAAAAGATGG
AACTGTTTATGCAATATGTTGCATAGGTCAGCACACAAAAGATACACTTTTATCTTGGCT
AAGATTATTAGAAAAGAATGGAAATCCTTGCTTAGAAAATCTTATTGTACTTTTTAAATT
AGCTACACCAGATAACACAACAGAAATAGTAGTGCAATCAAAAGATCCGGTTAAAACTTA
A
>g6404.t15 Gene=g6404 Length=202
MIRGRSCLVSLIKNRCKTQVFNHARVFCTKEEKKEETNFDEEKVKREKQHEFFTKRALIL
RGSFETIEDKNKGSYLEMIDIFINKDVHRRNHVEFIYAALKNMKDFGVIRDLEVYKKLID
VMPKGKFIPTNLFQVEFQHYPKQQQCIIDLLDQMEDNGVIPDYEMEDQLINIFGRRGHPV
RKFWRMMYWMPKFKNLSPWIVP
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g6404.t15 | PANTHER | PTHR13113 | ECSIT EVOLUTIONARILY CONSERVED SIGNALING INTERMEDIATE IN TOLL PATHWAYS | 22 | 202 | 0 |
| 1 | g6404.t15 | Pfam | PF06239 | Evolutionarily conserved signalling intermediate in Toll pathway | 34 | 202 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
