Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Mitochondrial fission 1 protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g642 g642.t19 TTS g642.t19 4864730 4864730
chr_3 g642 g642.t19 isoform g642.t19 4865397 4866302
chr_3 g642 g642.t19 exon g642.t19.exon1 4865397 4865532
chr_3 g642 g642.t19 cds g642.t19.CDS1 4865397 4865532
chr_3 g642 g642.t19 exon g642.t19.exon2 4865592 4865704
chr_3 g642 g642.t19 cds g642.t19.CDS2 4865592 4865704
chr_3 g642 g642.t19 exon g642.t19.exon3 4865770 4865827
chr_3 g642 g642.t19 cds g642.t19.CDS3 4865770 4865827
chr_3 g642 g642.t19 exon g642.t19.exon4 4865884 4866100
chr_3 g642 g642.t19 cds g642.t19.CDS4 4865884 4866095
chr_3 g642 g642.t19 exon g642.t19.exon5 4866222 4866302
chr_3 g642 g642.t19 TSS g642.t19 4866370 4866370

Sequences

>g642.t19 Gene=g642 Length=605
ATGTTTACTTCATTTAACACTGATAAAAATCGAGATATCGAAGAATTGTTGAGTGACACA
GTGTCAGCACAGGATTTAGAATTTATATGAAAGAGTTGACAGAAAAGAAATTTGTATCAG
CAAAAACACAATTCGAGTATGCATGGTGTTTAGTAAGAAGCAAATATGGTGCAGATATAA
ATAATGGAATCAAAAATTTTGAATCACTTTGTAAAGATGATCCAGAAAATAAGAGAGACT
ACATTTATTACATTGCAATTGGTTATATTCGACTTAAAGACTTACCAACAGCACAAAAAT
ATGTGAAAGCTTTCCTTGAAATTGAACCAAATAATCATCAAGTGATTTTATTAGATGAAC
ATATTGAGACAGAAATGAGAAAAGAATTCAAAAGGGATGCAGCAGTTGCTGGTGGTGCTT
TGTTAGTTTTTGGTGGTTTACTTGGTGTTGGATTTGCTCTTGCTAAAAATCTTATAATGG
GAAAAAGTTTAATTATAACTTTTCTTGATAATTTCGCATGGTTAACAGTTAAATTTTTAT
GGAACAATATGGACATAATTGCGAATATAATATGGAAATTTGTCAAAATGGGTTTTCTAA
TTTAA

>g642.t19 Gene=g642 Length=172
MKELTEKKFVSAKTQFEYAWCLVRSKYGADINNGIKNFESLCKDDPENKRDYIYYIAIGY
IRLKDLPTAQKYVKAFLEIEPNNHQVILLDEHIETEMRKEFKRDAAVAGGALLVFGGLLG
VGFALAKNLIMGKSLIITFLDNFAWLTVKFLWNNMDIIANIIWKFVKMGFLI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g642.t19 CDD cd12212 Fis1 10 100 2.14517E-29
8 g642.t19 Gene3D G3DSA:1.25.40.10 - 1 126 3.4E-35
3 g642.t19 PANTHER PTHR13247 TETRATRICOPEPTIDE REPEAT PROTEIN 11 TPR REPEAT PROTEIN 11 7 125 1.7E-26
4 g642.t19 PANTHER PTHR13247:SF0 MITOCHONDRIAL FISSION 1 PROTEIN 7 125 1.7E-26
2 g642.t19 Pfam PF14852 Fis1 N-terminal tetratricopeptide repeat 14 45 1.8E-11
1 g642.t19 Pfam PF14853 Fis1 C-terminal tetratricopeptide repeat 50 100 4.6E-18
9 g642.t19 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 104 -
12 g642.t19 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 105 126 -
11 g642.t19 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 127 131 -
13 g642.t19 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 132 152 -
10 g642.t19 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 153 172 -
7 g642.t19 SUPERFAMILY SSF48452 TPR-like 5 127 7.59E-32
6 g642.t19 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 107 126 -
5 g642.t19 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 130 152 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF
GO:0000266 mitochondrial fission BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values