General information for g642.t21
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Mitochondrial fission 1 protein.
Parent gene
- The parent gene g642 is located on chr_3: 4865775..4872796 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g642 | g642.t21 | TTS | g642.t21 | 4864730 | 4864730 |
| chr_3 | g642 | g642.t21 | isoform | g642.t21 | 4865397 | 4866302 |
| chr_3 | g642 | g642.t21 | exon | g642.t21.exon1 | 4865397 | 4865704 |
| chr_3 | g642 | g642.t21 | cds | g642.t21.CDS1 | 4865694 | 4865704 |
| chr_3 | g642 | g642.t21 | exon | g642.t21.exon2 | 4865766 | 4865827 |
| chr_3 | g642 | g642.t21 | cds | g642.t21.CDS2 | 4865766 | 4865827 |
| chr_3 | g642 | g642.t21 | exon | g642.t21.exon3 | 4865884 | 4866113 |
| chr_3 | g642 | g642.t21 | cds | g642.t21.CDS3 | 4865884 | 4866113 |
| chr_3 | g642 | g642.t21 | exon | g642.t21.exon4 | 4866222 | 4866302 |
| chr_3 | g642 | g642.t21 | cds | g642.t21.CDS4 | 4866222 | 4866302 |
| chr_3 | g642 | g642.t21 | TSS | g642.t21 | 4866370 | 4866370 |
Sequences
>g642.t21 Gene=g642 Length=681
ATGTTTACTTCATTTAACACTGATAAAAATCGAGATATCGAAGAATTGTTGAGTGACACA
GTGTCAGCACAGGATTTAGAAAAAATCGAGAAAGTTTATATGAAAGAGTTGACAGAAAAG
AAATTTGTATCAGCAAAAACACAATTCGAGTATGCATGGTGTTTAGTAAGAAGCAAATAT
GGTGCAGATATAAATAATGGAATCAAAAATTTTGAATCACTTTGTAAAGATGATCCAGAA
AATAAGAGAGACTACATTTATTACATTGCAATTGGTTATATTCGACTTAAAGACTTACCA
ACAGCACAAAAATATGTGAAAGCTTTCCTTGAAATTGAACCAAATAATCATCAAGTGATT
TTATTAGATGTAAGAACATATTGAGACAGAAATGAGAAAAGAATTCAAAAGGGATGCAGC
AGTTGCTGGTGGTGCTTTGTTAGTTTTTGGTGGTTTACTTGGTGTTGGATTTGCTCTTGC
TAAAAAGTAATAATTTTTTTGTTTTTAAAGTGAATTTAGTGACAGTATAAAATCTACTTT
TCTAGTCTTATAATGGGAAAAAGTTTAATTATAACTTTTCTTGATAATTTCGCATGGTTA
ACAGTTAAATTTTTATGGAACAATATGGACATAATTGCGAATATAATATGGAAATTTGTC
AAAATGGGTTTTCTAATTTAA
>g642.t21 Gene=g642 Length=127
MFTSFNTDKNRDIEELLSDTVSAQDLEKIEKVYMKELTEKKFVSAKTQFEYAWCLVRSKY
GADINNGIKNFESLCKDDPENKRDYIYYIAIGYIRLKDLPTAQKYVKAFLEIEPNNHQVI
LLDVRTY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g642.t21 | CDD | cd12212 | Fis1 | 20 | 122 | 0 |
| 6 | g642.t21 | Gene3D | G3DSA:1.25.40.10 | - | 7 | 125 | 0 |
| 3 | g642.t21 | PANTHER | PTHR13247 | TETRATRICOPEPTIDE REPEAT PROTEIN 11 TPR REPEAT PROTEIN 11 | 7 | 122 | 0 |
| 4 | g642.t21 | PANTHER | PTHR13247:SF0 | MITOCHONDRIAL FISSION 1 PROTEIN | 7 | 122 | 0 |
| 2 | g642.t21 | Pfam | PF14852 | Fis1 N-terminal tetratricopeptide repeat | 47 | 78 | 0 |
| 1 | g642.t21 | Pfam | PF14853 | Fis1 C-terminal tetratricopeptide repeat | 83 | 122 | 0 |
| 5 | g642.t21 | SUPERFAMILY | SSF48452 | TPR-like | 14 | 120 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
| GO:0000266 | mitochondrial fission | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed