General information for g642.t25
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Mitochondrial fission 1 protein.
Parent gene
- The parent gene g642 is located on chr_3: 4865775..4872796 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g642 | g642.t25 | TTS | g642.t25 | 4864730 | 4864730 |
| chr_3 | g642 | g642.t25 | isoform | g642.t25 | 4865397 | 4866302 |
| chr_3 | g642 | g642.t25 | exon | g642.t25.exon1 | 4865397 | 4865532 |
| chr_3 | g642 | g642.t25 | cds | g642.t25.CDS1 | 4865397 | 4865532 |
| chr_3 | g642 | g642.t25 | exon | g642.t25.exon2 | 4865592 | 4865688 |
| chr_3 | g642 | g642.t25 | cds | g642.t25.CDS2 | 4865592 | 4865688 |
| chr_3 | g642 | g642.t25 | exon | g642.t25.exon3 | 4865754 | 4865827 |
| chr_3 | g642 | g642.t25 | cds | g642.t25.CDS3 | 4865754 | 4865827 |
| chr_3 | g642 | g642.t25 | exon | g642.t25.exon4 | 4865884 | 4866302 |
| chr_3 | g642 | g642.t25 | cds | g642.t25.CDS4 | 4865884 | 4866095 |
| chr_3 | g642 | g642.t25 | TSS | g642.t25 | 4866370 | 4866370 |
Sequences
>g642.t25 Gene=g642 Length=726
ATGTTTACTTCATTTAACACTGATAAAAATCGAGATATCGAAGAATTGTTGAGTGACACA
GTGTCAGCACAGGATTTAGAAGTAAGTTATATGAAAATTTCGCAATTTCCTTTTGCCATT
GAACGAGATGAAAAAAATCTTCTATGACTCATTCATATATGAAATTTTGTTTTTTTCTTT
ATTTTCCAGAAAATCGAGAAAGTTTATATGAAAGAGTTGACAGAAAAGAAATTTGTATCA
GCAAAAACACAATTCGAGTATGCATGGTGTTTAGTAAGAAGCAAATATGGTGCAGATATA
AATAATGGAATCAAAAATTTTGAATCACTTTGTAAAGATGATCCAGAAAATAAGAGAGAC
TACATTTATTACATTGCAATTGGTTATATTCGACTTAAAGACTTACCAACAGCACAAAAA
TATGTGAAAGCTTTCCTTGAAATTGAACCAAATAATCATCAAGTGATTTTATTAGATGTA
AGTGATATGACACAAATGAGAAAAGAATTCAAAAGGGATGCAGCAGTTGCTGGTGGTGCT
TTGTTAGTTTTTGGTGGTTTACTTGGTGTTGGATTTGCTCTTGCTAAAAATCTTATAATG
GGAAAAAGTTTAATTATAACTTTTCTTGATAATTTCGCATGGTTAACAGTTAAATTTTTA
TGGAACAATATGGACATAATTGCGAATATAATATGGAAATTTGTCAAAATGGGTTTTCTA
ATTTAA
>g642.t25 Gene=g642 Length=172
MKELTEKKFVSAKTQFEYAWCLVRSKYGADINNGIKNFESLCKDDPENKRDYIYYIAIGY
IRLKDLPTAQKYVKAFLEIEPNNHQVILLDVSDMTQMRKEFKRDAAVAGGALLVFGGLLG
VGFALAKNLIMGKSLIITFLDNFAWLTVKFLWNNMDIIANIIWKFVKMGFLI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g642.t25 | CDD | cd12212 | Fis1 | 10 | 100 | 1.35352E-26 |
| 8 | g642.t25 | Gene3D | G3DSA:1.25.40.10 | - | 1 | 126 | 1.4E-31 |
| 3 | g642.t25 | PANTHER | PTHR13247 | TETRATRICOPEPTIDE REPEAT PROTEIN 11 TPR REPEAT PROTEIN 11 | 7 | 124 | 2.4E-23 |
| 4 | g642.t25 | PANTHER | PTHR13247:SF0 | MITOCHONDRIAL FISSION 1 PROTEIN | 7 | 124 | 2.4E-23 |
| 2 | g642.t25 | Pfam | PF14852 | Fis1 N-terminal tetratricopeptide repeat | 14 | 45 | 1.8E-11 |
| 1 | g642.t25 | Pfam | PF14853 | Fis1 C-terminal tetratricopeptide repeat | 50 | 99 | 3.9E-15 |
| 9 | g642.t25 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 104 | - |
| 12 | g642.t25 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 105 | 126 | - |
| 11 | g642.t25 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 127 | 131 | - |
| 13 | g642.t25 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 132 | 152 | - |
| 10 | g642.t25 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 153 | 172 | - |
| 7 | g642.t25 | SUPERFAMILY | SSF48452 | TPR-like | 5 | 127 | 9.01E-29 |
| 6 | g642.t25 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 104 | 126 | - |
| 5 | g642.t25 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 130 | 152 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
| GO:0000266 | mitochondrial fission | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed