Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Mitochondrial fission 1 protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g642 g642.t9 TTS g642.t9 4863833 4863833
chr_3 g642 g642.t9 isoform g642.t9 4864620 4866302
chr_3 g642 g642.t9 exon g642.t9.exon1 4864620 4864674
chr_3 g642 g642.t9 cds g642.t9.CDS1 4864620 4864674
chr_3 g642 g642.t9 exon g642.t9.exon2 4865640 4865704
chr_3 g642 g642.t9 cds g642.t9.CDS2 4865640 4865704
chr_3 g642 g642.t9 exon g642.t9.exon3 4865770 4865827
chr_3 g642 g642.t9 cds g642.t9.CDS3 4865770 4865827
chr_3 g642 g642.t9 exon g642.t9.exon4 4865884 4866113
chr_3 g642 g642.t9 cds g642.t9.CDS4 4865884 4866113
chr_3 g642 g642.t9 exon g642.t9.exon5 4866222 4866302
chr_3 g642 g642.t9 cds g642.t9.CDS5 4866222 4866302
chr_3 g642 g642.t9 TSS g642.t9 4866370 4866370

Sequences

>g642.t9 Gene=g642 Length=489
ATGTTTACTTCATTTAACACTGATAAAAATCGAGATATCGAAGAATTGTTGAGTGACACA
GTGTCAGCACAGGATTTAGAAAAAATCGAGAAAGTTTATATGAAAGAGTTGACAGAAAAG
AAATTTGTATCAGCAAAAACACAATTCGAGTATGCATGGTGTTTAGTAAGAAGCAAATAT
GGTGCAGATATAAATAATGGAATCAAAAATTTTGAATCACTTTGTAAAGATGATCCAGAA
AATAAGAGAGACTACATTTATTACATTGCAATTGGTTATATTCGACTTAAAGACTTACCA
ACAGCACAAAAATATGTGAAAGCTTTCCTTGAAATTGAACCAAATAATCATCAAGTGATT
TTATTAGATGAACATATTGAGACAGAAATGAGAAAAGAATTCAAAAGGGATGCAGCAGTT
GCTGGTGGTGCTTTACACTATGACAAGAAGAAACAAGAAAAAGAAGAAATGAAGCCGTCA
AGTGATTGA

>g642.t9 Gene=g642 Length=162
MFTSFNTDKNRDIEELLSDTVSAQDLEKIEKVYMKELTEKKFVSAKTQFEYAWCLVRSKY
GADINNGIKNFESLCKDDPENKRDYIYYIAIGYIRLKDLPTAQKYVKAFLEIEPNNHQVI
LLDEHIETEMRKEFKRDAAVAGGALHYDKKKQEKEEMKPSSD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g642.t9 CDD cd12212 Fis1 20 133 0
6 g642.t9 Gene3D G3DSA:1.25.40.10 - 13 149 0
3 g642.t9 PANTHER PTHR13247 TETRATRICOPEPTIDE REPEAT PROTEIN 11 TPR REPEAT PROTEIN 11 7 144 0
4 g642.t9 PANTHER PTHR13247:SF0 MITOCHONDRIAL FISSION 1 PROTEIN 7 144 0
7 g642.t9 PIRSF PIRSF008835 TPR_repeat_11_Fis1 8 148 0
2 g642.t9 Pfam PF14852 Fis1 N-terminal tetratricopeptide repeat 47 78 0
1 g642.t9 Pfam PF14853 Fis1 C-terminal tetratricopeptide repeat 83 133 0
5 g642.t9 SUPERFAMILY SSF48452 TPR-like 14 146 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF
GO:0000266 mitochondrial fission BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed