General information for g6423.t28
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative L-dopachrome tautomerase yellow-f2.
Parent gene
- The parent gene g6423 is located on chr_2: 16908911..16909754 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6423 | g6423.t28 | isoform | g6423.t28 | 16906729 | 16909754 |
| chr_2 | g6423 | g6423.t28 | exon | g6423.t28.exon1 | 16906729 | 16906759 |
| chr_2 | g6423 | g6423.t28 | cds | g6423.t28.CDS1 | 16906729 | 16906759 |
| chr_2 | g6423 | g6423.t28 | exon | g6423.t28.exon2 | 16907987 | 16908180 |
| chr_2 | g6423 | g6423.t28 | cds | g6423.t28.CDS2 | 16907987 | 16908180 |
| chr_2 | g6423 | g6423.t28 | exon | g6423.t28.exon3 | 16908257 | 16908338 |
| chr_2 | g6423 | g6423.t28 | cds | g6423.t28.CDS3 | 16908257 | 16908338 |
| chr_2 | g6423 | g6423.t28 | exon | g6423.t28.exon4 | 16908408 | 16908431 |
| chr_2 | g6423 | g6423.t28 | cds | g6423.t28.CDS4 | 16908408 | 16908431 |
| chr_2 | g6423 | g6423.t28 | exon | g6423.t28.exon5 | 16908498 | 16908758 |
| chr_2 | g6423 | g6423.t28 | cds | g6423.t28.CDS5 | 16908498 | 16908758 |
| chr_2 | g6423 | g6423.t28 | exon | g6423.t28.exon6 | 16908877 | 16909281 |
| chr_2 | g6423 | g6423.t28 | cds | g6423.t28.CDS6 | 16908877 | 16908887 |
| chr_2 | g6423 | g6423.t28 | exon | g6423.t28.exon7 | 16909335 | 16909496 |
| chr_2 | g6423 | g6423.t28 | exon | g6423.t28.exon8 | 16909561 | 16909754 |
| chr_2 | g6423 | g6423.t28 | TTS | g6423.t28 | 16909746 | 16909746 |
| chr_2 | g6423 | g6423.t28 | TSS | g6423.t28 | NA | NA |
Sequences
>g6423.t28 Gene=g6423 Length=1353
ATGCAGAGCATCAATTATAAAGATTTACCTGGAGACGCAAATTTTAACTCATATGTTAAT
GTACCTTTTGGTGTGGCTCATTATGGAAATAAGCTTTTTGTAACGATTCCGAGACGTAAT
ATGGGAATTCCGAGTACTGTCAACATGGTCGAATTAACAGGAGCTGCACCACACATTAAT
CCTCTTTTAATAAGTTATCCAAATTTAAATATGAATACATTGACTCAAGGGAATCGACCA
AATGCTGAAAAAATTGTTTCAGTTTATCGTCCTCGAGTGGACAAATGTGATCGTTTGTGG
TTTGTAGATACCGGTGTATTGGAATATCCAAACAATCAAATAGTTGTCCAAAGACCATCA
ATTTGGGCTATTGATTTGAAAACTGATCAGCCAATAGGTCGATTTGAAATTCCTGACACG
ATTGTGCCAAATGGTCGAGGTCTCGCAGCAATCACAATTGACGATGATGATTGTTTAAAT
ACATTTGCTTATTTACCTGATTGGATGAATAATGCACTGTTAGTATTTTCAGCAAGTCAA
GCAAAAATGTGGCGCTTCAATCACAACTTTTTCTTCTTTAATCCGTTCGAAGAATGTGAA
TGAAATAACTTTAAAATAATTGTTAGGATTGCAATTCCAATGGAATGATGGAATTTTTTC
GATTGCCTTATCGAAGAAGAAGCCAAATGGTTTTAGAACAGCTTTCTTTCATCCTCTTGG
TTCTCATAGTGAATTTACTGTTTCAACTGAAGTGTTGAGAAATGAAGCACTTGCAAGTCG
TCGAACACATGGTGGTGATTTCAAATTTATCGGTCATCGAGGTCCTCACTCACAAAGTGG
TCCGCATGCTCTTGATTTGAACACAAATGTGATGTTTTTTGCTGAAATGCAAAATAATGC
AGTCAGTTGTTGGAATATTAAAAGAGATTTGAAACGTGCAAATATGGATATTGTTGAACA
AAATAATGCAACACTTATCTATCCTGTGGATTTAAATATTGATAATGAAAATACACTCTG
GGTGCTTTCAAATCGTTTACCTCGTTTCATTTATGACCGCTATGATACAAATGCTTATAA
CTTCAACATTTGGCGAGAAAATGTCGGTGATGCTCTCTTAGATACAACCTGCTTAACATA
AATAATTATCCTCGGCTGTTGGTGCACTATGGTGAAGTAAAATTGCAACAATTGCGAAAG
AGAGTGAGATAGAGTAGAAAAGTTTCCTCTTATACAAGTGAATTATTTTAAAATTGTTAT
TAAAATTCTACTGGCGCACTTTAATAAAACAAATTAAACAATAAAACTCCGACAGACGAC
TTAAAATTGCTTTCGCTATTGCAATAAAATTTC
>g6423.t28 Gene=g6423 Length=200
MQSINYKDLPGDANFNSYVNVPFGVAHYGNKLFVTIPRRNMGIPSTVNMVELTGAAPHIN
PLLISYPNLNMNTLTQGNRPNAEKIVSVYRPRVDKCDRLWFVDTGVLEYPNNQIVVQRPS
IWAIDLKTDQPIGRFEIPDTIVPNGRGLAAITIDDDDCLNTFAYLPDWMNNALLVFSASQ
AKMWRFNHNFFFFNPFEECE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g6423.t28 | Gene3D | G3DSA:2.120.10.30 | TolB | 2 | 199 | 0.00e+00 |
| 2 | g6423.t28 | PANTHER | PTHR10009 | PROTEIN YELLOW-RELATED | 12 | 197 | 0.00e+00 |
| 3 | g6423.t28 | PANTHER | PTHR10009:SF10 | L-DOPACHROME TAUTOMERASE YELLOW-F-RELATED | 12 | 197 | 0.00e+00 |
| 1 | g6423.t28 | Pfam | PF03022 | Major royal jelly protein | 86 | 196 | 0.00e+00 |
| 4 | g6423.t28 | SUPERFAMILY | SSF63825 | YWTD domain | 19 | 191 | 2.62e-05 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed