Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative L-dopachrome tautomerase yellow-f2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6423 g6423.t35 isoform g6423.t35 16906729 16909754
chr_2 g6423 g6423.t35 exon g6423.t35.exon1 16906729 16906759
chr_2 g6423 g6423.t35 cds g6423.t35.CDS1 16906729 16906759
chr_2 g6423 g6423.t35 exon g6423.t35.exon2 16907987 16908180
chr_2 g6423 g6423.t35 cds g6423.t35.CDS2 16907987 16908180
chr_2 g6423 g6423.t35 exon g6423.t35.exon3 16908257 16908360
chr_2 g6423 g6423.t35 cds g6423.t35.CDS3 16908257 16908360
chr_2 g6423 g6423.t35 exon g6423.t35.exon4 16908498 16908769
chr_2 g6423 g6423.t35 cds g6423.t35.CDS4 16908498 16908540
chr_2 g6423 g6423.t35 exon g6423.t35.exon5 16908911 16909281
chr_2 g6423 g6423.t35 exon g6423.t35.exon6 16909335 16909496
chr_2 g6423 g6423.t35 exon g6423.t35.exon7 16909561 16909754
chr_2 g6423 g6423.t35 TTS g6423.t35 16909746 16909746
chr_2 g6423 g6423.t35 TSS g6423.t35 NA NA

Sequences

>g6423.t35 Gene=g6423 Length=1328
ATGCAGAGCATCAATTATAAAGATTTACCTGGAGACGCAAATTTTAACTCATATGTTAAT
GTACCTTTTGGTGTGGCTCATTATGGAAATAAGCTTTTTGTAACGATTCCGAGACGTAAT
ATGGGAATTCCGAGTACTGTCAACATGGTCGAATTAACAGGAGCTGCACCACACATTAAT
CCTCTTTTAATAAGTTATCCAAATTTAAATATGAATACATTGACTCAAGGGAATCGACCA
AATGCTGAAAAAATTGTTTCAGTTTATCGTCCTCGAGTGGACAAATGTGATCGTTTGTGG
TTTGTAGGTATGCAAAACTTGATTTTTTTACAATCAAATAGTTGTCCAAAGACCATCAAT
TTGGGCTATTGATTTGAAAACTGATCAGCCAATAGGTCGATTTGAAATTCCTGACACGAT
TGTGCCAAATGGTCGAGGTCTCGCAGCAATCACAATTGACGATGATGATTGTTTAAATAC
ATTTGCTTATTTACCTGATTGGATGAATAATGCACTGTTAGTATTTTCAGCAAGTCAAGC
AAAAATGTGGCGCTTCAATCACAACTTTTTCTTCTTTAATCCGTTCGAAGGTATTATCAA
TGATTGCAATTCCAATGGAATGATGGAATTTTTTCGATTGCCTTATCGAAGAAGAAGCCA
AATGGTTTTAGAACAGCTTTCTTTCATCCTCTTGGTTCTCATAGTGAATTTACTGTTTCA
ACTGAAGTGTTGAGAAATGAAGCACTTGCAAGTCGTCGAACACATGGTGGTGATTTCAAA
TTTATCGGTCATCGAGGTCCTCACTCACAAAGTGGTCCGCATGCTCTTGATTTGAACACA
AATGTGATGTTTTTTGCTGAAATGCAAAATAATGCAGTCAGTTGTTGGAATATTAAAAGA
GATTTGAAACGTGCAAATATGGATATTGTTGAACAAAATAATGCAACACTTATCTATCCT
GTGGATTTAAATATTGATAATGAAAATACACTCTGGGTGCTTTCAAATCGTTTACCTCGT
TTCATTTATGACCGCTATGATACAAATGCTTATAACTTCAACATTTGGCGAGAAAATGTC
GGTGATGCTCTCTTAGATACAACCTGCTTAACATAAATAATTATCCTCGGCTGTTGGTGC
ACTATGGTGAAGTAAAATTGCAACAATTGCGAAAGAGAGTGAGATAGAGTAGAAAAGTTT
CCTCTTATACAAGTGAATTATTTTAAAATTGTTATTAAAATTCTACTGGCGCACTTTAAT
AAAACAAATTAAACAATAAAACTCCGACAGACGACTTAAAATTGCTTTCGCTATTGCAAT
AAAATTTC

>g6423.t35 Gene=g6423 Length=123
MQSINYKDLPGDANFNSYVNVPFGVAHYGNKLFVTIPRRNMGIPSTVNMVELTGAAPHIN
PLLISYPNLNMNTLTQGNRPNAEKIVSVYRPRVDKCDRLWFVGMQNLIFLQSNSCPKTIN
LGY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
3 g6423.t35 Gene3D G3DSA:2.120.10.30 TolB 2 120 0
1 g6423.t35 PANTHER PTHR10009 PROTEIN YELLOW-RELATED 12 104 0
2 g6423.t35 PANTHER PTHR10009:SF10 L-DOPACHROME TAUTOMERASE YELLOW-F-RELATED 12 104 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed