Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative L-dopachrome tautomerase yellow-f2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6423 g6423.t4 isoform g6423.t4 16906729 16909267
chr_2 g6423 g6423.t4 exon g6423.t4.exon1 16906729 16906759
chr_2 g6423 g6423.t4 cds g6423.t4.CDS1 16906729 16906759
chr_2 g6423 g6423.t4 exon g6423.t4.exon2 16907987 16908180
chr_2 g6423 g6423.t4 cds g6423.t4.CDS2 16907987 16908180
chr_2 g6423 g6423.t4 exon g6423.t4.exon3 16908257 16908338
chr_2 g6423 g6423.t4 cds g6423.t4.CDS3 16908257 16908338
chr_2 g6423 g6423.t4 exon g6423.t4.exon4 16908408 16908431
chr_2 g6423 g6423.t4 cds g6423.t4.CDS4 16908408 16908431
chr_2 g6423 g6423.t4 exon g6423.t4.exon5 16908498 16908770
chr_2 g6423 g6423.t4 cds g6423.t4.CDS5 16908498 16908770
chr_2 g6423 g6423.t4 exon g6423.t4.exon6 16908911 16909267
chr_2 g6423 g6423.t4 cds g6423.t4.CDS6 16908911 16908912
chr_2 g6423 g6423.t4 TTS g6423.t4 16909746 16909746
chr_2 g6423 g6423.t4 TSS g6423.t4 NA NA

Sequences

>g6423.t4 Gene=g6423 Length=961
ATGCAGAGCATCAATTATAAAGATTTACCTGGAGACGCAAATTTTAACTCATATGTTAAT
GTACCTTTTGGTGTGGCTCATTATGGAAATAAGCTTTTTGTAACGATTCCGAGACGTAAT
ATGGGAATTCCGAGTACTGTCAACATGGTCGAATTAACAGGAGCTGCACCACACATTAAT
CCTCTTTTAATAAGTTATCCAAATTTAAATATGAATACATTGACTCAAGGGAATCGACCA
AATGCTGAAAAAATTGTTTCAGTTTATCGTCCTCGAGTGGACAAATGTGATCGTTTGTGG
TTTGTAGATACCGGTGTATTGGAATATCCAAACAATCAAATAGTTGTCCAAAGACCATCA
ATTTGGGCTATTGATTTGAAAACTGATCAGCCAATAGGTCGATTTGAAATTCCTGACACG
ATTGTGCCAAATGGTCGAGGTCTCGCAGCAATCACAATTGACGATGATGATTGTTTAAAT
ACATTTGCTTATTTACCTGATTGGATGAATAATGCACTGTTAGTATTTTCAGCAAGTCAA
GCAAAAATGTGGCGCTTCAATCACAACTTTTTCTTCTTTAATCCGTTCGAAGGTATTATC
AATTGATTGCAATTCCAATGGAATGATGGAATTTTTTCGATTGCCTTATCGAAGAAGAAG
CCAAATGGTTTTAGAACAGCTTTCTTTCATCCTCTTGGTTCTCATAGTGAATTTACTGTT
TCAACTGAAGTGTTGAGAAATGAAGCACTTGCAAGTCGTCGAACACATGGTGGTGATTTC
AAATTTATCGGTCATCGAGGTCCTCACTCACAAAGTGGTCCGCATGCTCTTGATTTGAAC
ACAAATGTGATGTTTTTTGCTGAAATGCAAAATAATGCAGTCAGTTGTTGGAATATTAAA
AGAGATTTGAAACGTGCAAATATGGATATTGTTGAACAAAATAATGCAACACTTATCTAT
C

>g6423.t4 Gene=g6423 Length=201
MQSINYKDLPGDANFNSYVNVPFGVAHYGNKLFVTIPRRNMGIPSTVNMVELTGAAPHIN
PLLISYPNLNMNTLTQGNRPNAEKIVSVYRPRVDKCDRLWFVDTGVLEYPNNQIVVQRPS
IWAIDLKTDQPIGRFEIPDTIVPNGRGLAAITIDDDDCLNTFAYLPDWMNNALLVFSASQ
AKMWRFNHNFFFFNPFEGIIN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g6423.t4 Gene3D G3DSA:2.120.10.30 TolB 2 201 0.00e+00
2 g6423.t4 PANTHER PTHR10009 PROTEIN YELLOW-RELATED 12 198 0.00e+00
3 g6423.t4 PANTHER PTHR10009:SF10 L-DOPACHROME TAUTOMERASE YELLOW-F-RELATED 12 198 0.00e+00
1 g6423.t4 Pfam PF03022 Major royal jelly protein 86 197 0.00e+00
4 g6423.t4 SUPERFAMILY SSF63825 YWTD domain 19 192 1.83e-05

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed