General information for g6423.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g6423 is located on chr_2: 16908911..16909754 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6423 | g6423.t6 | isoform | g6423.t6 | 16906729 | 16909478 |
| chr_2 | g6423 | g6423.t6 | exon | g6423.t6.exon1 | 16906729 | 16906759 |
| chr_2 | g6423 | g6423.t6 | cds | g6423.t6.CDS1 | 16906729 | 16906759 |
| chr_2 | g6423 | g6423.t6 | exon | g6423.t6.exon2 | 16907987 | 16908180 |
| chr_2 | g6423 | g6423.t6 | cds | g6423.t6.CDS2 | 16907987 | 16908180 |
| chr_2 | g6423 | g6423.t6 | exon | g6423.t6.exon3 | 16908257 | 16908330 |
| chr_2 | g6423 | g6423.t6 | cds | g6423.t6.CDS3 | 16908257 | 16908330 |
| chr_2 | g6423 | g6423.t6 | exon | g6423.t6.exon4 | 16908401 | 16908431 |
| chr_2 | g6423 | g6423.t6 | cds | g6423.t6.CDS4 | 16908401 | 16908401 |
| chr_2 | g6423 | g6423.t6 | exon | g6423.t6.exon5 | 16908498 | 16908771 |
| chr_2 | g6423 | g6423.t6 | exon | g6423.t6.exon6 | 16908911 | 16909281 |
| chr_2 | g6423 | g6423.t6 | exon | g6423.t6.exon7 | 16909335 | 16909478 |
| chr_2 | g6423 | g6423.t6 | TTS | g6423.t6 | 16909746 | 16909746 |
| chr_2 | g6423 | g6423.t6 | TSS | g6423.t6 | NA | NA |
Sequences
>g6423.t6 Gene=g6423 Length=1119
ATGCAGAGCATCAATTATAAAGATTTACCTGGAGACGCAAATTTTAACTCATATGTTAAT
GTACCTTTTGGTGTGGCTCATTATGGAAATAAGCTTTTTGTAACGATTCCGAGACGTAAT
ATGGGAATTCCGAGTACTGTCAACATGGTCGAATTAACAGGAGCTGCACCACACATTAAT
CCTCTTTTAATAAGTTATCCAAATTTAAATATGAATACATTGACTCAAGGGAATCGACCA
AATGCTGAAAAAATTGTTTCAGTTTATCGTCCTCGAGTGGACAAATGTGATCGTTTGTGA
AAAAAGATACCGGTGTATTGGAATATCCAAACAATCAAATAGTTGTCCAAAGACCATCAA
TTTGGGCTATTGATTTGAAAACTGATCAGCCAATAGGTCGATTTGAAATTCCTGACACGA
TTGTGCCAAATGGTCGAGGTCTCGCAGCAATCACAATTGACGATGATGATTGTTTAAATA
CATTTGCTTATTTACCTGATTGGATGAATAATGCACTGTTAGTATTTTCAGCAAGTCAAG
CAAAAATGTGGCGCTTCAATCACAACTTTTTCTTCTTTAATCCGTTCGAAGGTATTATCA
ATTTGATTGCAATTCCAATGGAATGATGGAATTTTTTCGATTGCCTTATCGAAGAAGAAG
CCAAATGGTTTTAGAACAGCTTTCTTTCATCCTCTTGGTTCTCATAGTGAATTTACTGTT
TCAACTGAAGTGTTGAGAAATGAAGCACTTGCAAGTCGTCGAACACATGGTGGTGATTTC
AAATTTATCGGTCATCGAGGTCCTCACTCACAAAGTGGTCCGCATGCTCTTGATTTGAAC
ACAAATGTGATGTTTTTTGCTGAAATGCAAAATAATGCAGTCAGTTGTTGGAATATTAAA
AGAGATTTGAAACGTGCAAATATGGATATTGTTGAACAAAATAATGCAACACTTATCTAT
CCTGTGGATTTAAATATTGATAATGAAAATACACTCTGGGTGCTTTCAAATCGTTTACCT
CGTTTCATTTATGACCGCTATGATACAAATGCTTATAACTTCAACATTTGGCGAGAAAAT
GTCGGTGATGCTCTCTTAGATACAACCTGCTTAACATAA
>g6423.t6 Gene=g6423 Length=99
MQSINYKDLPGDANFNSYVNVPFGVAHYGNKLFVTIPRRNMGIPSTVNMVELTGAAPHIN
PLLISYPNLNMNTLTQGNRPNAEKIVSVYRPRVDKCDRL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g6423.t6 | Gene3D | G3DSA:2.120.10.30 | TolB | 2 | 99 | 0 |
| 1 | g6423.t6 | PANTHER | PTHR10009 | PROTEIN YELLOW-RELATED | 12 | 99 | 0 |
| 2 | g6423.t6 | PANTHER | PTHR10009:SF10 | L-DOPACHROME TAUTOMERASE YELLOW-F-RELATED | 12 | 99 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed