Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Chitotriosidase-1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6430 g6430.t3 TSS g6430.t3 17043834 17043834
chr_2 g6430 g6430.t3 isoform g6430.t3 17043854 17045073
chr_2 g6430 g6430.t3 exon g6430.t3.exon1 17043854 17043925
chr_2 g6430 g6430.t3 cds g6430.t3.CDS1 17043882 17043925
chr_2 g6430 g6430.t3 exon g6430.t3.exon2 17044046 17044155
chr_2 g6430 g6430.t3 cds g6430.t3.CDS2 17044046 17044155
chr_2 g6430 g6430.t3 exon g6430.t3.exon3 17044214 17044399
chr_2 g6430 g6430.t3 cds g6430.t3.CDS3 17044214 17044399
chr_2 g6430 g6430.t3 exon g6430.t3.exon4 17044461 17045073
chr_2 g6430 g6430.t3 cds g6430.t3.CDS4 17044461 17045071
chr_2 g6430 g6430.t3 TTS g6430.t3 17046018 17046018

Sequences

>g6430.t3 Gene=g6430 Length=981
ATGAAATATTTGGCTATTGCAATAATTTATGCCTTTGTATCCATCACAATGGCTCAAAGT
AAGTTTTCTTCTCTCATGGACAAGCATTAATCCAAATCCATCAATTTGTACACATTTGAT
TTATTCATTCCTTAATATTGGTGCTGATGGTTCTATTGTGCCATTTGATGCATCAGGATT
TAGTCTAACTGCATTTACTGGATTACGTTCACAAAATTCAGCTTTAAAAGTCATTTTGGG
AATTGGTGGAGCAACAGCATCAAATTTTGGACCTGTTGCAGCTAATAATGCATTGATAAA
TATATTTGCTAATAATGTTGCTCAAATCATCAATACTTATGGCTTTGATGGCGTTGATAT
TGATTGGGAATATCCAAGTGTTAATGAAAATTTCATTGGACTTTTAACTGCTGTTCGTAA
TGCATTGCCCAATGGAAAAATTCTTTCAATAGCTGTTGCTCCTGACTCAACAAGAGCTAG
TGCTTCTTATAATGCCCAAAGTGTTTCAGCTATAGTTGATTTTATAAATTTAATGACTTA
TGATTTCCATGGTGGTTGGGAAACTCAAACATATTCTCAAGCTCCTCTTTATGGTGGCAC
TTTAGATACTTCACCTTATTGGAAATCATTGAATGTTGATGCATGTGTTGGATATTGGAT
TTCACAAGGAGTTCCTAAAGATAAACTTGTTGTTGGTGTTCCGCTTTATGGTAGATCATA
TACTCTAGTAAATTCAAATAACAATGGCGTTGCGGCACCTGCTACTGGTCAAGCTGGAAA
TCCATCAACGCCAGTCTACAATCAAATTTGTTCAAATATTAAAAATAATGGATGGAAATC
AGGCTATTATAATCCACAAGCAATTTCTTATGCATATTCAGGCAATCAATGGGTTAGTTA
TGATGATTTAGTTTCGCTTACAACTAAAATCAGTTATATAAAAAGTAATAATTTGGGTGG
AATTATGTTTTGGTCTATGGA

>g6430.t3 Gene=g6430 Length=317
MPLYPSQWLKVSFLLSWTSINPNPSICTHLIYSFLNIGADGSIVPFDASGFSLTAFTGLR
SQNSALKVILGIGGATASNFGPVAANNALINIFANNVAQIINTYGFDGVDIDWEYPSVNE
NFIGLLTAVRNALPNGKILSIAVAPDSTRASASYNAQSVSAIVDFINLMTYDFHGGWETQ
TYSQAPLYGGTLDTSPYWKSLNVDACVGYWISQGVPKDKLVVGVPLYGRSYTLVNSNNNG
VAAPATGQAGNPSTPVYNQICSNIKNNGWKSGYYNPQAISYAYSGNQWVSYDDLVSLTTK
ISYIKSNNLGGIMFWSM

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g6430.t3 Gene3D G3DSA:3.20.20.80 Glycosidases 23 317 2.4E-90
8 g6430.t3 Gene3D G3DSA:3.10.50.10 - 226 291 2.4E-90
2 g6430.t3 PANTHER PTHR11177 CHITINASE 21 317 3.2E-81
1 g6430.t3 Pfam PF00704 Glycosyl hydrolases family 18 17 317 8.9E-74
6 g6430.t3 ProSitePatterns PS01095 Chitinases family 18 active site. 106 114 -
5 g6430.t3 SMART SM00636 2g34 8 317 2.0E-90
4 g6430.t3 SUPERFAMILY SSF51445 (Trans)glycosidases 16 316 1.79E-72
3 g6430.t3 SUPERFAMILY SSF54556 Chitinase insertion domain 227 291 1.96E-13

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds MF
GO:0008061 chitin binding MF
GO:0005975 carbohydrate metabolic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed