General information for g6430.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Chitotriosidase-1.
Parent gene
- The parent gene g6430 is located on chr_2: 17045379..17045789 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6430 | g6430.t4 | TSS | g6430.t4 | 17043834 | 17043834 |
| chr_2 | g6430 | g6430.t4 | isoform | g6430.t4 | 17043854 | 17045212 |
| chr_2 | g6430 | g6430.t4 | exon | g6430.t4.exon1 | 17043854 | 17043937 |
| chr_2 | g6430 | g6430.t4 | cds | g6430.t4.CDS1 | 17043882 | 17043937 |
| chr_2 | g6430 | g6430.t4 | exon | g6430.t4.exon2 | 17044046 | 17044155 |
| chr_2 | g6430 | g6430.t4 | cds | g6430.t4.CDS2 | 17044046 | 17044155 |
| chr_2 | g6430 | g6430.t4 | exon | g6430.t4.exon3 | 17044214 | 17044399 |
| chr_2 | g6430 | g6430.t4 | cds | g6430.t4.CDS3 | 17044214 | 17044399 |
| chr_2 | g6430 | g6430.t4 | exon | g6430.t4.exon4 | 17044461 | 17045087 |
| chr_2 | g6430 | g6430.t4 | cds | g6430.t4.CDS4 | 17044461 | 17045087 |
| chr_2 | g6430 | g6430.t4 | exon | g6430.t4.exon5 | 17045149 | 17045212 |
| chr_2 | g6430 | g6430.t4 | cds | g6430.t4.CDS5 | 17045149 | 17045210 |
| chr_2 | g6430 | g6430.t4 | TTS | g6430.t4 | 17046018 | 17046018 |
Sequences
>g6430.t4 Gene=g6430 Length=1071
ATGAAATATTTGGCTATTGCAATAATTTATGCCTTTGTATCCATCACAATGGCTCAAAGT
AAGTTTTCTTCTAAAAAGAAATTTCTCATGGACAAGCATTAATCCAAATCCATCAATTTG
TACACATTTGATTTATTCATTCCTTAATATTGGTGCTGATGGTTCTATTGTGCCATTTGA
TGCATCAGGATTTAGTCTAACTGCATTTACTGGATTACGTTCACAAAATTCAGCTTTAAA
AGTCATTTTGGGAATTGGTGGAGCAACAGCATCAAATTTTGGACCTGTTGCAGCTAATAA
TGCATTGATAAATATATTTGCTAATAATGTTGCTCAAATCATCAATACTTATGGCTTTGA
TGGCGTTGATATTGATTGGGAATATCCAAGTGTTAATGAAAATTTCATTGGACTTTTAAC
TGCTGTTCGTAATGCATTGCCCAATGGAAAAATTCTTTCAATAGCTGTTGCTCCTGACTC
AACAAGAGCTAGTGCTTCTTATAATGCCCAAAGTGTTTCAGCTATAGTTGATTTTATAAA
TTTAATGACTTATGATTTCCATGGTGGTTGGGAAACTCAAACATATTCTCAAGCTCCTCT
TTATGGTGGCACTTTAGATACTTCACCTTATTGGAAATCATTGAATGTTGATGCATGTGT
TGGATATTGGATTTCACAAGGAGTTCCTAAAGATAAACTTGTTGTTGGTGTTCCGCTTTA
TGGTAGATCATATACTCTAGTAAATTCAAATAACAATGGCGTTGCGGCACCTGCTACTGG
TCAAGCTGGAAATCCATCAACGCCAGTCTACAATCAAATTTGTTCAAATATTAAAAATAA
TGGATGGAAATCAGGCTATTATAATCCACAAGCAATTTCTTATGCATATTCAGGCAATCA
ATGGGTTAGTTATGATGATTTAGTTTCGCTTACAACTAAAATCAGTTATATAAAAAGTAA
TAATTTGGGTGGAATTATGTTTTGGTCTATGGATCAAGATGATTATTTGGGAAATTGTGG
AAATGGAAAATATCCAATGATTTCCACAGCTTATAATCTTTTGATTCAAAA
>g6430.t4 Gene=g6430 Length=347
MPLYPSQWLKVSFLLKRNFSWTSINPNPSICTHLIYSFLNIGADGSIVPFDASGFSLTAF
TGLRSQNSALKVILGIGGATASNFGPVAANNALINIFANNVAQIINTYGFDGVDIDWEYP
SVNENFIGLLTAVRNALPNGKILSIAVAPDSTRASASYNAQSVSAIVDFINLMTYDFHGG
WETQTYSQAPLYGGTLDTSPYWKSLNVDACVGYWISQGVPKDKLVVGVPLYGRSYTLVNS
NNNGVAAPATGQAGNPSTPVYNQICSNIKNNGWKSGYYNPQAISYAYSGNQWVSYDDLVS
LTTKISYIKSNNLGGIMFWSMDQDDYLGNCGNGKYPMISTAYNLLIQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g6430.t4 | Gene3D | G3DSA:3.10.50.10 | - | 234 | 295 | 4.6E-18 |
| 2 | g6430.t4 | PANTHER | PTHR11177 | CHITINASE | 23 | 344 | 5.0E-87 |
| 1 | g6430.t4 | Pfam | PF00704 | Glycosyl hydrolases family 18 | 25 | 324 | 3.3E-75 |
| 6 | g6430.t4 | ProSitePatterns | PS01095 | Chitinases family 18 active site. | 110 | 118 | - |
| 5 | g6430.t4 | SMART | SM00636 | 2g34 | 16 | 324 | 4.3E-95 |
| 4 | g6430.t4 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 21 | 345 | 9.21E-78 |
| 3 | g6430.t4 | SUPERFAMILY | SSF54556 | Chitinase insertion domain | 231 | 295 | 2.54E-13 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | MF |
| GO:0008061 | chitin binding | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed