Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Chitotriosidase-1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6430 g6430.t5 TSS g6430.t5 17043834 17043834
chr_2 g6430 g6430.t5 isoform g6430.t5 17043854 17045789
chr_2 g6430 g6430.t5 exon g6430.t5.exon1 17043854 17043889
chr_2 g6430 g6430.t5 exon g6430.t5.exon2 17043968 17043989
chr_2 g6430 g6430.t5 exon g6430.t5.exon3 17044046 17044155
chr_2 g6430 g6430.t5 exon g6430.t5.exon4 17044214 17044399
chr_2 g6430 g6430.t5 exon g6430.t5.exon5 17044461 17045087
chr_2 g6430 g6430.t5 cds g6430.t5.CDS1 17044625 17045087
chr_2 g6430 g6430.t5 exon g6430.t5.exon6 17045149 17045789
chr_2 g6430 g6430.t5 cds g6430.t5.CDS2 17045149 17045789
chr_2 g6430 g6430.t5 TTS g6430.t5 17046018 17046018

Sequences

>g6430.t5 Gene=g6430 Length=1622
ATGAAATATTTGGCTATTGCAATAATTTATGCCTTTAACGGGTTGTCTGCTATTTTCCCT
CATGGACAAGCATTAATCCAAATCCATCAATTTGTACACATTTGATTTATTCATTCCTTA
ATATTGGTGCTGATGGTTCTATTGTGCCATTTGATGCATCAGGATTTAGTCTAACTGCAT
TTACTGGATTACGTTCACAAAATTCAGCTTTAAAAGTCATTTTGGGAATTGGTGGAGCAA
CAGCATCAAATTTTGGACCTGTTGCAGCTAATAATGCATTGATAAATATATTTGCTAATA
ATGTTGCTCAAATCATCAATACTTATGGCTTTGATGGCGTTGATATTGATTGGGAATATC
CAAGTGTTAATGAAAATTTCATTGGACTTTTAACTGCTGTTCGTAATGCATTGCCCAATG
GAAAAATTCTTTCAATAGCTGTTGCTCCTGACTCAACAAGAGCTAGTGCTTCTTATAATG
CCCAAAGTGTTTCAGCTATAGTTGATTTTATAAATTTAATGACTTATGATTTCCATGGTG
GTTGGGAAACTCAAACATATTCTCAAGCTCCTCTTTATGGTGGCACTTTAGATACTTCAC
CTTATTGGAAATCATTGAATGTTGATGCATGTGTTGGATATTGGATTTCACAAGGAGTTC
CTAAAGATAAACTTGTTGTTGGTGTTCCGCTTTATGGTAGATCATATACTCTAGTAAATT
CAAATAACAATGGCGTTGCGGCACCTGCTACTGGTCAAGCTGGAAATCCATCAACGCCAG
TCTACAATCAAATTTGTTCAAATATTAAAAATAATGGATGGAAATCAGGCTATTATAATC
CACAAGCAATTTCTTATGCATATTCAGGCAATCAATGGGTTAGTTATGATGATTTAGTTT
CGCTTACAACTAAAATCAGTTATATAAAAAGTAATAATTTGGGTGGAATTATGTTTTGGT
CTATGGATCAAGATGATTATTTGGGAAATTGTGGAAATGGAAAATATCCAATGATTTCCA
CAGCTTATAATCTTTTGATTCAAAACAGCGTCATCGCTCCAAATGTAACTGTAGTTACAA
CTACAACAACAACTACACTGCCGCCGACTACACAAGCTGCAACACCACCATCTGGTTCAT
TCTCATGTCCTCTATCTTCAGGAATTTTCACTAATCCAAGCAGTTGTACTTCATATATAA
GTTGTGCAAATGGTGTCGCTTTTATTCAAGAATGTCCAAAAGGTTTGAATTTCAATGGTT
TAACAAGAGTTTGTGATTATCCATCTAATGCACCATGCTCAAATATTCCTCCAATTATTC
AAGTTACTACTACAAAACCAATTGTTAATACTAATGCACCTACTTTGGCACCGACAACTA
CCACTACTACTAAGCCGATAATAGTCACTAATCCAGCCACAGTAGCACCCACGTCAGCTC
CATCATCTTCTAATCCTTGTGCCAATAAACTTGGAATTATCGCTAATCCTGCAGACTGCA
ATACTTTTTATAATTGTGGACCCGGTGGAGCAGGAACACTTATGAATTGTGGACCTGGTC
TTGGCTTTAATGCAGCTATTCAAGCATGCGACTATAAGTCAAACATTCCTGGATGTATTT
AA

>g6430.t5 Gene=g6430 Length=367
MTYDFHGGWETQTYSQAPLYGGTLDTSPYWKSLNVDACVGYWISQGVPKDKLVVGVPLYG
RSYTLVNSNNNGVAAPATGQAGNPSTPVYNQICSNIKNNGWKSGYYNPQAISYAYSGNQW
VSYDDLVSLTTKISYIKSNNLGGIMFWSMDQDDYLGNCGNGKYPMISTAYNLLIQNSVIA
PNVTVVTTTTTTTLPPTTQAATPPSGSFSCPLSSGIFTNPSSCTSYISCANGVAFIQECP
KGLNFNGLTRVCDYPSNAPCSNIPPIIQVTTTKPIVNTNAPTLAPTTTTTTKPIIVTNPA
TVAPTSAPSSSNPCANKLGIIANPADCNTFYNCGPGGAGTLMNCGPGLGFNAAIQACDYK
SNIPGCI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g6430.t5 Gene3D G3DSA:3.20.20.80 Glycosidases 1 170 0.0000000
15 g6430.t5 Gene3D G3DSA:3.10.50.10 - 58 123 0.0000000
12 g6430.t5 Gene3D G3DSA:2.170.140.10 Antimicrobial Protein 204 267 0.0000000
14 g6430.t5 Gene3D G3DSA:3.20.20.80 Glycosidases 268 367 0.0000000
4 g6430.t5 PANTHER PTHR11177 CHITINASE 1 175 0.0000000
3 g6430.t5 Pfam PF00704 Glycosyl hydrolases family 18 1 152 0.0000000
2 g6430.t5 Pfam PF01607 Chitin binding Peritrophin-A domain 210 260 0.0000000
1 g6430.t5 Pfam PF01607 Chitin binding Peritrophin-A domain 314 366 0.0000000
16 g6430.t5 ProSiteProfiles PS50940 Chitin-binding type-2 domain profile. 207 262 13.8880000
17 g6430.t5 ProSiteProfiles PS50940 Chitin-binding type-2 domain profile. 311 367 12.6570000
9 g6430.t5 SMART SM00636 2g34 1 152 0.0009300
10 g6430.t5 SMART SM00494 chi_10 208 262 0.0000000
11 g6430.t5 SMART SM00494 chi_10 312 367 0.0000001
8 g6430.t5 SUPERFAMILY SSF51445 (Trans)glycosidases 1 197 0.0000000
5 g6430.t5 SUPERFAMILY SSF54556 Chitinase insertion domain 59 123 0.0000000
6 g6430.t5 SUPERFAMILY SSF57625 Invertebrate chitin-binding proteins 202 265 0.0000000
7 g6430.t5 SUPERFAMILY SSF57625 Invertebrate chitin-binding proteins 308 366 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008061 chitin binding MF
GO:0005975 carbohydrate metabolic process BP
GO:0005576 extracellular region CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed