General information for g6430.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Probable chitinase 10.
Parent gene
- The parent gene g6430 is located on chr_2: 17045379..17045789 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6430 | g6430.t7 | TSS | g6430.t7 | 17043834 | 17043834 |
| chr_2 | g6430 | g6430.t7 | isoform | g6430.t7 | 17043854 | 17045789 |
| chr_2 | g6430 | g6430.t7 | exon | g6430.t7.exon1 | 17043854 | 17043926 |
| chr_2 | g6430 | g6430.t7 | exon | g6430.t7.exon2 | 17044046 | 17044155 |
| chr_2 | g6430 | g6430.t7 | exon | g6430.t7.exon3 | 17044214 | 17044399 |
| chr_2 | g6430 | g6430.t7 | exon | g6430.t7.exon4 | 17044461 | 17045087 |
| chr_2 | g6430 | g6430.t7 | cds | g6430.t7.CDS1 | 17044625 | 17045087 |
| chr_2 | g6430 | g6430.t7 | exon | g6430.t7.exon5 | 17045149 | 17045379 |
| chr_2 | g6430 | g6430.t7 | cds | g6430.t7.CDS2 | 17045149 | 17045379 |
| chr_2 | g6430 | g6430.t7 | exon | g6430.t7.exon6 | 17045680 | 17045789 |
| chr_2 | g6430 | g6430.t7 | cds | g6430.t7.CDS3 | 17045680 | 17045789 |
| chr_2 | g6430 | g6430.t7 | TTS | g6430.t7 | 17046018 | 17046018 |
Sequences
>g6430.t7 Gene=g6430 Length=1337
ATGAAATATTTGGCTATTGCAATAATTTATGCCTTTGTATCCATCACAATGGCTCAAAGT
AAGTTTTCTTCTACTCATGGACAAGCATTAATCCAAATCCATCAATTTGTACACATTTGA
TTTATTCATTCCTTAATATTGGTGCTGATGGTTCTATTGTGCCATTTGATGCATCAGGAT
TTAGTCTAACTGCATTTACTGGATTACGTTCACAAAATTCAGCTTTAAAAGTCATTTTGG
GAATTGGTGGAGCAACAGCATCAAATTTTGGACCTGTTGCAGCTAATAATGCATTGATAA
ATATATTTGCTAATAATGTTGCTCAAATCATCAATACTTATGGCTTTGATGGCGTTGATA
TTGATTGGGAATATCCAAGTGTTAATGAAAATTTCATTGGACTTTTAACTGCTGTTCGTA
ATGCATTGCCCAATGGAAAAATTCTTTCAATAGCTGTTGCTCCTGACTCAACAAGAGCTA
GTGCTTCTTATAATGCCCAAAGTGTTTCAGCTATAGTTGATTTTATAAATTTAATGACTT
ATGATTTCCATGGTGGTTGGGAAACTCAAACATATTCTCAAGCTCCTCTTTATGGTGGCA
CTTTAGATACTTCACCTTATTGGAAATCATTGAATGTTGATGCATGTGTTGGATATTGGA
TTTCACAAGGAGTTCCTAAAGATAAACTTGTTGTTGGTGTTCCGCTTTATGGTAGATCAT
ATACTCTAGTAAATTCAAATAACAATGGCGTTGCGGCACCTGCTACTGGTCAAGCTGGAA
ATCCATCAACGCCAGTCTACAATCAAATTTGTTCAAATATTAAAAATAATGGATGGAAAT
CAGGCTATTATAATCCACAAGCAATTTCTTATGCATATTCAGGCAATCAATGGGTTAGTT
ATGATGATTTAGTTTCGCTTACAACTAAAATCAGTTATATAAAAAGTAATAATTTGGGTG
GAATTATGTTTTGGTCTATGGATCAAGATGATTATTTGGGAAATTGTGGAAATGGAAAAT
ATCCAATGATTTCCACAGCTTATAATCTTTTGATTCAAAACAGCGTCATCGCTCCAAATG
TAACTGTAGTTACAACTACAACAACAACTACACTGCCGCCGACTACACAAGCTGCAACAC
CACCATCTGGTTCATTCTCATGTCCTCTATCTTCAGGAATTTTCACTAATCCAAGCAGTT
GTACTTCATATATAAGTTGTGCAAATGATTGTGGACCCGGTGGAGCAGGAACACTTATGA
ATTGTGGACCTGGTCTTGGCTTTAATGCAGCTATTCAAGCATGCGACTATAAGTCAAACA
TTCCTGGATGTATTTAA
>g6430.t7 Gene=g6430 Length=267
MTYDFHGGWETQTYSQAPLYGGTLDTSPYWKSLNVDACVGYWISQGVPKDKLVVGVPLYG
RSYTLVNSNNNGVAAPATGQAGNPSTPVYNQICSNIKNNGWKSGYYNPQAISYAYSGNQW
VSYDDLVSLTTKISYIKSNNLGGIMFWSMDQDDYLGNCGNGKYPMISTAYNLLIQNSVIA
PNVTVVTTTTTTTLPPTTQAATPPSGSFSCPLSSGIFTNPSSCTSYISCANDCGPGGAGT
LMNCGPGLGFNAAIQACDYKSNIPGCI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g6430.t7 | Gene3D | G3DSA:3.10.50.10 | - | 62 | 123 | 0.0000000 |
| 9 | g6430.t7 | Gene3D | G3DSA:2.170.140.10 | Antimicrobial Protein | 204 | 267 | 0.0000000 |
| 3 | g6430.t7 | PANTHER | PTHR11177 | CHITINASE | 1 | 175 | 0.0000000 |
| 2 | g6430.t7 | Pfam | PF00704 | Glycosyl hydrolases family 18 | 1 | 152 | 0.0000000 |
| 1 | g6430.t7 | Pfam | PF01607 | Chitin binding Peritrophin-A domain | 210 | 266 | 0.0000000 |
| 11 | g6430.t7 | ProSiteProfiles | PS50940 | Chitin-binding type-2 domain profile. | 207 | 267 | 10.6910000 |
| 7 | g6430.t7 | SMART | SM00636 | 2g34 | 1 | 152 | 0.0009300 |
| 8 | g6430.t7 | SMART | SM00494 | chi_10 | 208 | 267 | 0.0000011 |
| 6 | g6430.t7 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 1 | 197 | 0.0000000 |
| 4 | g6430.t7 | SUPERFAMILY | SSF54556 | Chitinase insertion domain | 59 | 123 | 0.0000000 |
| 5 | g6430.t7 | SUPERFAMILY | SSF57625 | Invertebrate chitin-binding proteins | 202 | 266 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008061 | chitin binding | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
| GO:0005576 | extracellular region | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed