General information for g6430.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g6430 is located on chr_2: 17045379..17045789 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6430 | g6430.t8 | isoform | g6430.t8 | 17045379 | 17045789 |
| chr_2 | g6430 | g6430.t8 | exon | g6430.t8.exon1 | 17045379 | 17045789 |
| chr_2 | g6430 | g6430.t8 | cds | g6430.t8.CDS1 | 17045709 | 17045789 |
| chr_2 | g6430 | g6430.t8 | TTS | g6430.t8 | 17046018 | 17046018 |
| chr_2 | g6430 | g6430.t8 | TSS | g6430.t8 | NA | NA |
Sequences
>g6430.t8 Gene=g6430 Length=411
GGTGTCGCTTTTATTCAAGAATGTCCAAAAGGTTTGAATTTCAATGGTTTAACAAGAGTT
TGTGATTATCCATCTAATGCACCATGCTCAAATATTCCTCCAATTATTCAAGTTACTACT
ACAAAACCAATTGTTAATACTAATGCACCTACTTTGGCACCGACAACTACCACTACTACT
AAGCCGATAATAGTCACTAATCCAGCCACAGTAGCACCCACGTCAGCTCCATCATCTTCT
AATCCTTGTGCCAATAAACTTGGAATTATCGCTAATCCTGCAGACTGCAATACTTTTTAT
AATTGTGGACCCGGTGGAGCAGGAACACTTATGAATTGTGGACCTGGTCTTGGCTTTAAT
GCAGCTATTCAAGCATGCGACTATAAGTCAAACATTCCTGGATGTATTTAA
>g6430.t8 Gene=g6430 Length=26
MNCGPGLGFNAAIQACDYKSNIPGCI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g6430.t8 | Gene3D | G3DSA:2.170.140.10 | Antimicrobial Protein | 1 | 26 | 1.0e-05 |
| 1 | g6430.t8 | Pfam | PF01607 | Chitin binding Peritrophin-A domain | 1 | 25 | 1.8e-05 |
| 2 | g6430.t8 | SUPERFAMILY | SSF57625 | Invertebrate chitin-binding proteins | 1 | 25 | 4.2e-06 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008061 | chitin binding | MF |
| GO:0005576 | extracellular region | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed