Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytochrome P450 9e2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g644 g644.t2 TTS g644.t2 4932821 4932821
chr_3 g644 g644.t2 isoform g644.t2 4932876 4934709
chr_3 g644 g644.t2 exon g644.t2.exon1 4932876 4933541
chr_3 g644 g644.t2 cds g644.t2.CDS1 4933071 4933541
chr_3 g644 g644.t2 exon g644.t2.exon2 4933665 4934442
chr_3 g644 g644.t2 cds g644.t2.CDS2 4933665 4934442
chr_3 g644 g644.t2 exon g644.t2.exon3 4934498 4934709
chr_3 g644 g644.t2 cds g644.t2.CDS3 4934498 4934709
chr_3 g644 g644.t2 TSS g644.t2 4934775 4934775

Sequences

>g644.t2 Gene=g644 Length=1656
ATGGATATTTATTTAATAATAATTTGGGTTGTCATTTTTCTAGGATATTTCATTTACAAA
AAAGCAACTAAAAATGCAAAATTCTTTGAAAAACAAGGAGTTCCATTTAAAAAACCACTG
CCGTTTGTCGGTAATTCATTACGACTTTTAATGAAGAAGGAAAATATGATAGAATCTTTA
ATGGATTATTATGAAAAATTTAAACATAGTTCTGTTTATGGAGTGTTCAGTATGAACGTA
CCTTTTTTTGTTATCACTGATCCAGAATTGATAAAACAAATTACAATTAAAGATTTTGAT
AGCTTTGTCAATCATGATAAGAGCTTTAATGAAGATGTCGATAAGTTTTCAAGCAAAATG
TTATTTACATTGATAGATGAAAAGTGGAAACATATGAGATCAGTTCTTAGTCCCATTTTC
ACAAGTTCTAAAATGAAAATGATGTTTGGAATTTTATCAGAATGTGCAAATGAATTTGTT
GAACATCATGAAGAAAAAGCAAAGCATGGAAAAGTCATTGTTAATTGTGTTGAAACTTAT
CCACGTTATACTGTTGATGGTATTTCTACTGCTGTTCTTGGGTTCAAGGGAGACTGTATT
AAGAATGAAGATAGCAAGCTCTATAAATTAGCAATGCGTATGAGAAAACCAACATTTTTG
ACAAATCTGAAACTTATGCTTTTCATCGTCTTTCGTTGGCTTTACATTAAACTTGGCTTA
CAATTGACACTCAAAGAAGTTTATGATTTCTTTTATAATGCAATCATTAAAGTAATGAAT
GAACGTGAAGAAAAAGGAATTTTCCGGCCTGATGTCGTGCAATTGCTACTTCAAGCTCGT
AAAGGACAATTGCAAAAGGAAAGTGATGTCAATGAAAAAGAATTATCAAACTTTTCTGCC
AATATTGAATATGATACTGGAGCTCAAAATAGGAAAATAACTAATTGGACTGATGAGCAT
TTTATGGCTCAAGGATTCCTGTTCTTTGCGGCTGGCTTTGACACCACTAACATTCTACTT
CAAATTACCAGTTATTGTTTAGCAAAAAATAAGGAAGTTCAAGAAGAATTAATCAGAGAA
ATTGATGATGTTTTTGAAGAACTCGATGGAAAACCAATCACATATGAAGCATTGCATAAA
ATGAAATATTTGGATATGGTTATTTCTGAAGCATTAAGATTTTGGCCTCCAGCATTTGCA
ACAACACGTCAATGTAATAAAGATTATGATATGAAATTGAAAGATGGAAAAGTTATCAAA
ATTAAAGATGGTGATCTTATTCTTCTACCAATCTATGCAATTCATCATGATGAAAGATTT
TTCCCAAATCCAGAGAAATTCGATCCACTTCGATTTAGTGATGAAAATAAAGAATCAATT
GCATTAGGATCTTACATTCCATTCGGCAGTGGACCAAGAGTAAGTTATAATTCATTATTG
ATGAATTTTTCATTAGTTTAACTTTTTTAGGTTTGCATTGGAAGTCGTTTTGCATTAATG
GAAGCTAAATTGCTCATATTTAATGTTTTGAGTAAATTCACAATGGAAGTTTGTGATCAG
ACACCAGAAAAACTTGAATTGATTCCATCAATGACAGAAATTACTTTCAAAAAGGCAATT
TGTGTTGAATATCGTCCACGAAAGAAGAACAATTGA

>g644.t2 Gene=g644 Length=486
MDIYLIIIWVVIFLGYFIYKKATKNAKFFEKQGVPFKKPLPFVGNSLRLLMKKENMIESL
MDYYEKFKHSSVYGVFSMNVPFFVITDPELIKQITIKDFDSFVNHDKSFNEDVDKFSSKM
LFTLIDEKWKHMRSVLSPIFTSSKMKMMFGILSECANEFVEHHEEKAKHGKVIVNCVETY
PRYTVDGISTAVLGFKGDCIKNEDSKLYKLAMRMRKPTFLTNLKLMLFIVFRWLYIKLGL
QLTLKEVYDFFYNAIIKVMNEREEKGIFRPDVVQLLLQARKGQLQKESDVNEKELSNFSA
NIEYDTGAQNRKITNWTDEHFMAQGFLFFAAGFDTTNILLQITSYCLAKNKEVQEELIRE
IDDVFEELDGKPITYEALHKMKYLDMVISEALRFWPPAFATTRQCNKDYDMKLKDGKVIK
IKDGDLILLPIYAIHHDERFFPNPEKFDPLRFSDENKESIALGSYIPFGSGPRVSYNSLL
MNFSLV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g644.t2 Gene3D G3DSA:1.10.630.10 Cytochrome p450 17 475 6.9E-107
2 g644.t2 PANTHER PTHR24292 CYTOCHROME P450 6 473 5.2E-135
3 g644.t2 PANTHER PTHR24292:SF90 CYTOCHROME P450 317A1-RELATED 6 473 5.2E-135
5 g644.t2 PRINTS PR00464 Group II E-class P450 signature 126 146 3.5E-11
4 g644.t2 PRINTS PR00464 Group II E-class P450 signature 182 200 3.5E-11
8 g644.t2 PRINTS PR00385 P450 superfamily signature 331 348 5.6E-5
9 g644.t2 PRINTS PR00385 P450 superfamily signature 386 397 5.6E-5
6 g644.t2 PRINTS PR00464 Group II E-class P450 signature 424 439 3.5E-11
7 g644.t2 PRINTS PR00385 P450 superfamily signature 466 475 5.6E-5
1 g644.t2 Pfam PF00067 Cytochrome P450 35 473 2.2E-68
16 g644.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 5 -
18 g644.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 6 22 -
14 g644.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 23 218 -
17 g644.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 219 236 -
15 g644.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 237 486 -
12 g644.t2 SUPERFAMILY SSF48264 Cytochrome P450 35 474 1.11E-90
11 g644.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 5 19 -
10 g644.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 219 236 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0004497 monooxygenase activity MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed